Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02688 ATGAAGATAGTTGTAACCCTCATCTTCAGTTTATCCCTGCTCTCTCTCTCCCACGCTTCTGTGGTAGATTTCTGTGTGGCAGATTACACAGCTCCCAATGGCCCTGCAGGGTACTCATGCAAGACGCCTGCAAAGGTGACAGTGAATGACTTTGTCTACTCTGGCCTTGGCACTGCTGGCAACACCTCAAACATCATCAAAGCTGCAGTTACTCCAGCATTTGATGCCCAATTCCCTGGTGTCAATGGCCTTGGCATTTCTGTTGCACGTTTGGACTTGGCATCTGGTGGGGTAATCCCACTCCACACACACCCTGGAGCCTCAGAACTGTTGGTTGTTGTAGAGGGTCAAATCTGTGCTGGATTCGTTGATTCTGGCAACAATGTGTACCTCAAGACCCTCGAAAAGGGTGATATCATGGTGTTCCCTCAGGGCTTGTTGCACTTCCAAATCAACTCTGGTGACTCTCAGGGTTTAGCTTTTGTTAGCTTCAGCAGTGCCAATCCTGGCCTACAGATTCTCGACTTTGCTTTGTTCAAGAGTGACTTCCCCACTGAACTCATCACCCAAACTACTTTCATTGATGCTGCTGTGGTCAAGAAGCTGAAGGGTGTTCTTGGAGGGTCAGGCTTTGTTAACCAGATTATCAGTGATTTGGTTTTGGTTATATTGTTAATTTCTTGTTGTCAAGTCAAGTAA 699 0.4692 MKIVVTLIFSLSLLSLSHASVVDFCVADYTAPNGPAGYSCKTPAKVTVNDFVYSGLGTAGNTSNIIKAAVTPAFDAQFPGVNGLGISVARLDLASGGVIPLHTHPGASELLVVVEGQICAGFVDSGNNVYLKTLEKGDIMVFPQGLLHFQINSGDSQGLAFVSFSSANPGLQILDFALFKSDFPTELITQTTFIDAAVVKKLKGVLGGSGFVNQIISDLVLVILLISCCQVK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02688 232 ProSitePatterns Germin family signature. 97 110 IPR019780 GO:0030145
Phco7g02688 232 PRINTS Germin signature 102 122 IPR001929 GO:0030145
Phco7g02688 232 PRINTS Germin signature 132 152 IPR001929 GO:0030145
Phco7g02688 232 PRINTS Germin signature 165 180 IPR001929 GO:0030145
Phco7g02688 232 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 17 203 - -
Phco7g02688 232 SUPERFAMILY RmlC-like cupins 21 212 IPR011051 -
Phco7g02688 232 SMART Cupin_1_3 54 200 IPR006045 -
Phco7g02688 232 Gene3D Jelly Rolls 18 209 IPR014710 -
Phco7g02688 232 Pfam Cupin 55 198 IPR006045 -
Phco7g02688 232 CDD cupin_OxOx 18 206 IPR001929 GO:0030145
Phco7g02688 232 FunFam Auxin-binding protein ABP19a 18 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02688 Phco-Chr7 45828311 45829154 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01942 8 20581815 20582441 Phco7g02688 7 45828311 45829154 PCT