Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01927 ATGGGTGATTTCCAAGGTCCCTTCATATTGTCACCCCCTCCATCACCCTCTTCCTCGGATAAATCCAGCACAACCATGTTGTACTATGGCCTTGTAGTGGTGGGGGTTGCAGCTATGGCATTAGCCCTCTACAACTTCATCATCATCAGAAGAAGAAGCAGGAGACGCCACATGCAATCAGAAGTGGAAGGGGCAAATGGGTTGGTGGAGGTGGTGATGGAAAGTAGAATAGAGAACTTGAACTTGAACTTGAACTTGGTGTCAAGCTTCAAGTACAAGAAAGAAGTAGTTGTGGGTTATGATGATGAATGTTCAGTTTGCTTATCGGGTTTTGAAGAAGGAGAAGAAGTTGGGAAGCTGCCACAGTGCAAGCACTGCTTCCACTCTCCATGCATACACATGTGGCTCTATTCTCACTTCGACTGCCCAATTTGTCGAACACCTGTTCTTCGTTTCTCGCACCACAACTCTGGTCCGGCATTGCTTCAATCCGGCACTGGTGTGTCCGTATGA 513 0.4737 MGDFQGPFILSPPPSPSSSDKSSTTMLYYGLVVVGVAAMALALYNFIIIRRRSRRRHMQSEVEGANGLVEVVMESRIENLNLNLNLVSSFKYKKEVVVGYDDECSVCLSGFEEGEEVGKLPQCKHCFHSPCIHMWLYSHFDCPICRTPVLRFSHHNSGPALLQSGTGVSV 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01927 170 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 18 149 IPR044675 -
Phco8g01927 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 154 IPR013083 -
Phco8g01927 170 SMART ring_2 104 145 IPR001841 -
Phco8g01927 170 CDD RING-H2_EL5-like 103 146 - -
Phco8g01927 170 Pfam Ring finger domain 102 146 IPR001841 -
Phco8g01927 170 SUPERFAMILY RING/U-box 95 152 - -
Phco8g01927 170 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01927 Phco-Chr8 20404158 20404670 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01927 8 20404158 20404670 Phco8g01927 8 20404158 20404670 ECH
Phco8g01927 8 20404158 20404670 Phco7g02701 7 45983907 45984410 PCT