Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01875 ATGGTCCCACACGAAGCCAGCCTCCATAAAAGACAAGTCAACCCTATTGCACTCCACACGTTTGCACCACTTCTTGGAATGGCAAGTAAGATATTTCTTGCCCTTCTTTTCGTAAGCTATGTGGTTGCGGTCTCTGCTGGTAACTTGAACCAAGACTTTGAGATAACATGGGGTGATGGTCGTGCCAAAATCCTCAACAATGGAGAACTTCTCACTTTGTCCCTAGACAAGGCCTCTGGCTCTGGATTTCGTTCTAGAAATGAATACTTGTTTGGAAAAATTGACATGCAGCTAAAGCTCGTGCCTGGTAACTCTGCAGGCACAGTCACAGCTTATTATCTATCTTCTCTTGGAGATGTTCATGATGAAATTGATTTTGAATTTCTGGGCAACTTGAGTGGTGATCCATATATTCTTCATACAAACATATTCACCCAAGGGAAAGGTAACAGGGAACAACAGTTCTATCTGTGGTTCGACCCCACCAAGGACTTCCACACATATTCCATTCTTTGGAATCCTCAGAGCATCGTATTCTCTGTGGATGGGACACCCATAAGGGAGTTCAAGAATCTTGAATCAAAAGGAGTTTCTTTTCCCAAAAACCAAGCCATGAGGATATATTCAAGCCTTTGGAATGCTGATGACTGGGCCACAAGGGGAGGCCTAGTGAAGACTGATTGGAGCCAAGCTCCATTCACAGCCTCTTACAGGAACTTCAATGCTCAAGCATGTGTTTGGACTTCTTCTTCAGGCTCATCTTGTTCATCCAACAATCCATCATCAAACCAATCATGGATGAAGCAATCAATGGATGCAACAGGGCAAGCCAGAATTCAGTGGGTGCAAAAGAACTACATGATATACAACTACTGCACTGATACTAAGCGTTTTCCACAAGGCCTTCCTCCTGAATGCACAATCGCATGA 930 0.4387 MVPHEASLHKRQVNPIALHTFAPLLGMASKIFLALLFVSYVVAVSAGNLNQDFEITWGDGRAKILNNGELLTLSLDKASGSGFRSRNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGDVHDEIDFEFLGNLSGDPYILHTNIFTQGKGNREQQFYLWFDPTKDFHTYSILWNPQSIVFSVDGTPIREFKNLESKGVSFPKNQAMRIYSSLWNADDWATRGGLVKTDWSQAPFTASYRNFNAQACVWTSSSGSSCSSNNPSSNQSWMKQSMDATGQARIQWVQKNYMIYNYCTDTKRFPQGLPPECTIA 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01875 309 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 43 237 IPR000757 GO:0004553|GO:0005975
Phco8g01875 309 PIRSF EndGlu_transf 16 309 IPR016455 GO:0010411|GO:0016762|GO:0042546
Phco8g01875 309 SUPERFAMILY Concanavalin A-like lectins/glucanases 50 308 IPR013320 -
Phco8g01875 309 CDD GH16_XET 45 306 IPR016455 GO:0010411|GO:0016762|GO:0042546
Phco8g01875 309 PRINTS Glycosyl hydrolase family 16 signature 157 174 IPR008264 GO:0004553|GO:0005975
Phco8g01875 309 PRINTS Glycosyl hydrolase family 16 signature 139 152 IPR008264 GO:0004553|GO:0005975
Phco8g01875 309 PRINTS Glycosyl hydrolase family 16 signature 81 99 IPR008264 GO:0004553|GO:0005975
Phco8g01875 309 FunFam Xyloglucan endotransglucosylase/hydrolase 36 308 - -
Phco8g01875 309 ProSitePatterns Glycosyl hydrolases family 16 active sites. 123 133 IPR008263 GO:0004553|GO:0005975
Phco8g01875 309 Gene3D - 35 308 - -
Phco8g01875 309 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 47 306 IPR044791 GO:0004553
Phco8g01875 309 Pfam Glycosyl hydrolases family 16 50 229 IPR000757 GO:0004553|GO:0005975
Phco8g01875 309 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 262 306 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01875 Phco-Chr8 19797301 19798766 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01875 8 19797301 19798766 Phco7g02745 7 46472535 46473895 PCT