Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02745 ATGAAAAATATTGGGTTTCTTGTGGTGGTGGTAGCTACCTTTGTGGTGGCAGCCACCGCTGGTAGCTTCTTCCAAGACTTTGAATTAACATGGGGTGGTGGTCGCGCCAAAATCCTTGAAAATGGACAGCTTCTTACTCTCACCCTAGACAAGGCCTCTGGCTCTGGCTTTCGTTCCAAGAATGAGTACTTGTTCGGAAAAATTGACATGCAGCTCAAACTGGTGCCTGGAAACTCAGCTGGCACTGTCACAGCCTATTATCTATCTTCTCTTGGACCTACTCATGATGAAATAGACTTCGAATTTTTGGGCAACTTGAGTGGTGATCCTTACACTCTTCACACCAACGTGTTCAGCCAAGGGAAAGGGAATAGAGAACAACAGTTCCATCTATGGTTCGACCCCACCAAGGACTTCCACACATACTCAGTCCAATGGAATCCTGCAAGCATCATATTTTCTGTGGATGGGACACCCATAAGGGAGTTCAAGAATTTGGAGACAAAGGGTGTTCCATTCCCCAAGAACCAACCTATGAGAATATACTCTAGTCTATGGGATGCTGAGGATTGGGCCACAAGAGGTGGGCTAGTGAAAACGGACTGGAGCCAGGCCCCATTCATGGCCTCATACAGAAACTTCAATGCAGAAGCTTGTGTTTGGTCTTCTTCAGGTTCTTCTTCATGTGCTTCCTCCTCTGGCCAATCACTGGATGCCACGGGGCAAGCCAAGATTCGTTGGGTGCAAAAGAATTACATGGTTTACAACTACTGCACTGATACCAGACGCTTCTCACAAGGGCTCCCTCCAGAATGTTCATCTGCATGA 828 0.471 MKNIGFLVVVVATFVVAATAGSFFQDFELTWGGGRAKILENGQLLTLTLDKASGSGFRSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGPTHDEIDFEFLGNLSGDPYTLHTNVFSQGKGNREQQFHLWFDPTKDFHTYSVQWNPASIIFSVDGTPIREFKNLETKGVPFPKNQPMRIYSSLWDAEDWATRGGLVKTDWSQAPFMASYRNFNAEACVWSSSGSSSCASSSGQSLDATGQAKIRWVQKNYMVYNYCTDTRRFSQGLPPECSSA 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02745 275 Gene3D - 8 275 - -
Phco7g02745 275 PRINTS Glycosyl hydrolase family 16 signature 55 73 IPR008264 GO:0004553|GO:0005975
Phco7g02745 275 PRINTS Glycosyl hydrolase family 16 signature 113 126 IPR008264 GO:0004553|GO:0005975
Phco7g02745 275 PRINTS Glycosyl hydrolase family 16 signature 131 148 IPR008264 GO:0004553|GO:0005975
Phco7g02745 275 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 273 IPR013320 -
Phco7g02745 275 CDD GH16_XET 21 272 IPR016455 GO:0010411|GO:0016762|GO:0042546
Phco7g02745 275 Pfam Glycosyl hydrolases family 16 25 203 IPR000757 GO:0004553|GO:0005975
Phco7g02745 275 PIRSF EndGlu_transf 1 275 IPR016455 GO:0010411|GO:0016762|GO:0042546
Phco7g02745 275 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 231 272 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Phco7g02745 275 ProSitePatterns Glycosyl hydrolases family 16 active sites. 97 107 IPR008263 GO:0004553|GO:0005975
Phco7g02745 275 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 17 211 IPR000757 GO:0004553|GO:0005975
Phco7g02745 275 FunFam Xyloglucan endotransglucosylase/hydrolase 9 274 - -
Phco7g02745 275 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 17 272 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02745 Phco-Chr7 46472535 46473895 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01875 8 19797301 19798766 Phco7g02745 7 46472535 46473895 PCT