Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01856 ATGATGTACGAGCAACAGCAACGTTTTCAGCAGCCGATGTCTGTGAAGGTGGATATGAGGAAGAAAACGGAGAGAAGCAAAGGCATAGAGGAAGAGAGGCTTGAAATAGTAGACTTGAGTGGCATGTCCCTCGACTCCCTTCCTAACCCCTCTCTTAATTTAGCCACCATTTGCAAGCTGGACCTCTCCAATAACAATCTTCAGAATATACCAGAGTCCTTAACAGCGAGACTGCTGAACATGGTGGTGTTGGACGTGCACTCCAACCAGCTTAGGCACCTTCCCAACTCCATTGGCTGCCTCTCTAAGCTCAAGGTTTTGAATGTCTCTGGCAACCTCATCGAATACCTTCCCAAAACAATTGAAAATTGCAGAAGCTTAGAAGAACTGAATGCGAACTTCAATAAGTTGATCCAGCTTCCAGAGAACATAGGGTACGAGCTGACAAACCTGAAGAAGCTATCAGTGAACTCCAACAAGCTGGTGTTCCTTCCTCGCTCGACCTCTCACATGACCGCTCTGAAGATTCTGGACGCGCGTTTGAACTGCCTGAGGTCTCTCCCAGAAGATCTCGAGAACCTGATAAACCTAGAAACTCTGAACGTGAGCCAGAACTTCCAGTACCTGGATTCTCTACCCTACTCGGTGGGGCTCCTCCTCTCTCTTGTGGAACTAGACGCCAGCTACAACAAGATCAGGTCCTTGCCGGACTCCATCGGGTGCCTGAAGAAGTTGCAGAAGCTGAGCGTGGAAGGGAACCCTCTGAGTTCGCCGCCCCCGGAAGTGGTGGAGCAGGGGTTGCATGCGGTGAAGGAGTACCTGTGCCAGAAGATGAACGCGGGCCATCAGAGCCCCACGAAGAAGAAGTCGTGGGTGGGGAGGCTGGTGAAGTATGGCACCTTCAATGGACACAACAGCAGAGGTGGGATCCGGGAGGAACGTGAAGCGTTCATCATGCCTGATTACAGACCAATCGATAGCCTTGCTTCGCCGCGCTACACCGGCATGTTCTCGACTCGTCGCCTCTTCTCACCCCGCAATTACTTCACCAACTGA 1056 0.5142 MMYEQQQRFQQPMSVKVDMRKKTERSKGIEEERLEIVDLSGMSLDSLPNPSLNLATICKLDLSNNNLQNIPESLTARLLNMVVLDVHSNQLRHLPNSIGCLSKLKVLNVSGNLIEYLPKTIENCRSLEELNANFNKLIQLPENIGYELTNLKKLSVNSNKLVFLPRSTSHMTALKILDARLNCLRSLPEDLENLINLETLNVSQNFQYLDSLPYSVGLLLSLVELDASYNKIRSLPDSIGCLKKLQKLSVEGNPLSSPPPEVVEQGLHAVKEYLCQKMNAGHQSPTKKKSWVGRLVKYGTFNGHNSRGGIREEREAFIMPDYRPIDSLASPRYTGMFSTRRLFSPRNYFTN 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01856 351 PANTHER - 34 145 - -
Phco8g01856 351 SMART LRR_bac_2 148 167 - -
Phco8g01856 351 SMART LRR_bac_2 173 190 - -
Phco8g01856 351 SMART LRR_bac_2 101 120 - -
Phco8g01856 351 SMART LRR_bac_2 124 143 - -
Phco8g01856 351 SMART LRR_bac_2 54 73 - -
Phco8g01856 351 SMART LRR_bac_2 219 238 - -
Phco8g01856 351 ProSiteProfiles Leucine-rich repeat profile. 221 242 IPR001611 GO:0005515
Phco8g01856 351 SUPERFAMILY L domain-like 34 260 - -
Phco8g01856 351 ProSiteProfiles Leucine-rich repeat profile. 56 77 IPR001611 GO:0005515
Phco8g01856 351 Gene3D Ribonuclease Inhibitor 2 144 IPR032675 -
Phco8g01856 351 Gene3D Ribonuclease Inhibitor 147 276 IPR032675 -
Phco8g01856 351 SMART LRR_typ_2 219 241 IPR003591 -
Phco8g01856 351 SMART LRR_typ_2 171 194 IPR003591 -
Phco8g01856 351 SMART LRR_typ_2 54 77 IPR003591 -
Phco8g01856 351 SMART LRR_typ_2 125 147 IPR003591 -
Phco8g01856 351 SMART LRR_typ_2 242 265 IPR003591 -
Phco8g01856 351 SMART LRR_typ_2 78 100 IPR003591 -
Phco8g01856 351 SMART LRR_typ_2 148 170 IPR003591 -
Phco8g01856 351 SMART LRR_typ_2 101 124 IPR003591 -
Phco8g01856 351 Pfam Leucine rich repeat 59 114 IPR001611 GO:0005515
Phco8g01856 351 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01856 Phco-Chr8 19616681 19620172 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01856 8 19616681 19620172 Phco8g01856 8 19616681 19620172 ECH
Phco8g01856 8 19616681 19620172 Phco7g02761 7 46606376 46609450 PCT