Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01852 ATGGAAGTCTTTGTATCGTCAAATTATTCTCGGGGTGTTCAACAAGATCTGCATAGCTGTGTGATGGAAAAAGAAGAATGTAAGAGAGTATTTTATTGCTTGCCAGCAGTGCCACCCAAACGAAGCCATTCTTCATTTTCACGCGTGAACTCTGAAGAATCCAATCTCACGCATTGCATTAGTCAGTGTTCACTTGCCACTTTTGATTTGTGCCACAAAGTTCGTTTCCTTCCTGAAGGGTTTCAGGTTGCGGAGGAAGAGAAAGAGGAAGACGAAGACGAGAATATCGCTGTCGGCCAGACTACTAACATAGTCTCTTTATTTTCCCGCATGAGTTTCTCCAAGGGTTCTCCTGGCAGCCAGACGCCGGGTGATATTGAGGCTGGGTCTCCCACTGTCTGGTCTGATGATTTTGATGGAGACTTTTCTGCTGATCCATTTGATCTTACCAGAACAAAGAATGCTCCGATTCAACGCCTCAGGCGCTGGAGGCAAGCGGCGCTTGTCCTCAATGCTTCTCGACGATTTCGTTACACCTTGGACTTAAAGAAAGAAGAAGAGAAGAAGAGAGTATTAAGAATTGTTATAGTGCATACACGGGCCATTCAGGCTGCATATCGGTTCAAGGAAGCTGGACAAATGAATGGACTACGAACTATAAAACCTCATTCAAGCTCCACTGGAGAATTTTCACCTCATTCAAGCTCCACTGGAGAATTTTCAATTGGACAAGAACAACTTTCTTCAATTTCAAGGAACCGTGATACTACTGCTCTGCGGGAAAATGAAGGGGTTGTAGGGTTATCAAATTTATTGAAAACCAATTTAGAGAAGGGCATTCGAGGTGATGATGATGACTTGGTAATACGGAGGAATGCATTTGGCTCCAACAACTACCCTCGAAAGGCCGGAAGAAATTTTTTGATGTTTATGTGGGATGCTTGCAAGGATCTGACCTTGATTATTCTAATGGTAGCCGCAATGGCTTCATTAGCACTGGGGATAAAATCTGAGGGTATCCAGGAAGGTTGGTATGACGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTCTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCAAGATCTAAATGAGCACAAGAGAAACATAAGTTTGGAGGTCACTCGAGATGGTAGAAGAGTTGAGATCTCCATATATGATGTTGTTGTTGGTGATGTTATTCCCCTTAACATTGGTAACCAGGTCCCCGCTGATGGAGTTTTGATCACCGGTCACTCTCTTGCAATTGATGAATCAAGTATGACCGGGGAGAGCAAAATTGTCGAAAAAAATTCTAATGATCCTTTTCTGATTTCTGGTTGTAAAGTTGCAGATGGCAATGGAACTATGCTGGTAACGGCTGTTGGTATTAATACTGAATGGGGGCTTCTAATGGCTAGCATTTCAGAAGACAATGGTGAAGAAACTCCTTTGCAGGTACGCTTAAATGGTCTCGCCACCTTAATTGGTATTGTTGGACTCTCTGTGGCTGTTATTGTTCTGATAGTGCTGCTGGCCAGGTATTTCTCTGGGCATACTAGAAACCCAGATGGAAGTGTTCAATTTATAGCGGGTAAAACGAAAGTTGGTGATGCTATTGATGGAGTAATCAAGATATTCACTGTTGCGGTCACCATTGTAGTGGTTGCAGTGCCTGAAGGGCTGCCTTTAGCAGTTACGTTAACACTTGCCTACTCAATGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTCTCTGCCTGTGAGACAATGGGGTCAGCCACAACTATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAGATGACTGTGGTTGAGGCTTGCATTGGTGGGAAGAAGATCATTCCTCCTGATGATTCACAACAATTCTCTCCTATGCTACGCTCTTTGCTGATTGAAGGTGTTGCACAGAACACTAATGGAAGTGTTTATGTCCCTGAGGGTGGTAATGATGTTGAGATTTCTGGATCACCAACAGAAAAGGCAATTTTAGAGTGGGGAATTAAGCTTGGGATGCGTTTTGATGCTGCCAGATCAGAATCATCAATTATCCATGTCTTCCCCTTTAATTCAGACAAAAAGCGAGGAGGAGTTGCAATACAGATTCCTGACTCTGAAATCCATATACATTGGAAAGGTGCTGCCGAGATAGTCCTTGCTTGCTGTACAGGGTATATTGATGTTAATGATCAGTTCGTAGAGATGGATGAAGAGAAGATGTCACAATTTAAAAAAGCTATTGAAGATATGGCTGCTGATAGTCTACGCTGTGTTGCAATTGCATATAGATCATATGAAATGGAGAATGTTCCAACTAGTGAAGAACTTGCTCACTGGTCATTACCAGACAATGATCTTTTTTTATTGGCTATTATTGGCCTGAAGGATCCTTGTCGACCTGGGGTCAAAGATGCAGTGCAGCTTTGCCAAAAGGCTGGGGTTAAGGTAAAAATGGTCACTGGTGACAATGTTAAAACCGCAAAAGCAATTGCTGTGGAATGTGGAATTCTTGGTTCAATCTCTGAAGCTACAGAGCCAATCATCATTGAAGGAAAAAGATTTCGTGCCTTGACAGATGAAGGGAGAGTAGAAATTGTTGACAGCATATTGGTTATGGGACGGTCATCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAGGGACATGTTGTGGCTGTAACTGGAGATGGAACAAATGATGCTCCCGCGCTACATGAGGCCGATATTGGTCTTGCAATGGGTATACAAGGAACAGAAGTTGCTAAAGAGAGCTCTGATATTATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAAATGGGGGCGGTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCAGCACTTGCTATAAACGTTGTTGCTGCATTTTCCACAGGTGACATCCCACTAAATACAGTACAGCTTCTTTGGGTAAATCTTATCATGGATACTCTTGGAGCATTAGCCTTGGCAACTGAACCACCAACTGATTCCCTGATGGATCAGCGTCCAATGGGCCGAAGAGAACCTCTTGTATCAAATATTATGTGGAGGAATCTGCTGATACAGGCAATGTATCAAGTTTCTGTGTTGCTTATACTTAATTTCCAAGGTGTGAAGTTACTGGGTTTGAGGAATGAACCCAACCGCCCTGCAATCAAAGTGAAGAACTCTCTGATATTCAATGCATTTGTTTTTTGTCAAGTCTTTAATGAATTTAATGCCCGAAAGCCAGATAAATTCAACATATTCAAGGGAGTCACAAGAAACTACCTCTTTATGGGGATAGTGGGAACAACTGTTGTGCTCCAGATTGTTATCATTGAATTTCTTGGAAAGTTCACTAAAACAGTCAAGCTTAATTGGAAGCTGTGGCTCATTTCTGTTATTATAGCATTTATCAGCTGGCCTCTTGCCGTGGTTGGAAAACTGATACCAGTACCGAAGGTTGAACTCAGTAACTTTTTCCGAAGATGTATTCGAAGAACTTAA 3579 0.4199 MEVFVSSNYSRGVQQDLHSCVMEKEECKRVFYCLPAVPPKRSHSSFSRVNSEESNLTHCISQCSLATFDLCHKVRFLPEGFQVAEEEKEEDEDENIAVGQTTNIVSLFSRMSFSKGSPGSQTPGDIEAGSPTVWSDDFDGDFSADPFDLTRTKNAPIQRLRRWRQAALVLNASRRFRYTLDLKKEEEKKRVLRIVIVHTRAIQAAYRFKEAGQMNGLRTIKPHSSSTGEFSPHSSSTGEFSIGQEQLSSISRNRDTTALRENEGVVGLSNLLKTNLEKGIRGDDDDLVIRRNAFGSNNYPRKAGRNFLMFMWDACKDLTLIILMVAAMASLALGIKSEGIQEGWYDGGSIAFAVILVILVTAISDYKQSLQFQDLNEHKRNISLEVTRDGRRVEISIYDVVVGDVIPLNIGNQVPADGVLITGHSLAIDESSMTGESKIVEKNSNDPFLISGCKVADGNGTMLVTAVGINTEWGLLMASISEDNGEETPLQVRLNGLATLIGIVGLSVAVIVLIVLLARYFSGHTRNPDGSVQFIAGKTKVGDAIDGVIKIFTVAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEACIGGKKIIPPDDSQQFSPMLRSLLIEGVAQNTNGSVYVPEGGNDVEISGSPTEKAILEWGIKLGMRFDAARSESSIIHVFPFNSDKKRGGVAIQIPDSEIHIHWKGAAEIVLACCTGYIDVNDQFVEMDEEKMSQFKKAIEDMAADSLRCVAIAYRSYEMENVPTSEELAHWSLPDNDLFLLAIIGLKDPCRPGVKDAVQLCQKAGVKVKMVTGDNVKTAKAIAVECGILGSISEATEPIIIEGKRFRALTDEGRVEIVDSILVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALAINVVAAFSTGDIPLNTVQLLWVNLIMDTLGALALATEPPTDSLMDQRPMGRREPLVSNIMWRNLLIQAMYQVSVLLILNFQGVKLLGLRNEPNRPAIKVKNSLIFNAFVFCQVFNEFNARKPDKFNIFKGVTRNYLFMGIVGTTVVLQIVIIEFLGKFTKTVKLNWKLWLISVIIAFISWPLAVVGKLIPVPKVELSNFFRRCIRRT 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01852 1192 FunFam Calcium-transporting ATPase 806 957 - -
Phco8g01852 1192 Pfam E1-E2 ATPase 384 583 - -
Phco8g01852 1192 Pfam haloacid dehalogenase-like hydrolase 602 926 - -
Phco8g01852 1192 CDD P-type_ATPase_Ca_PMCA-like 290 1045 - -
Phco8g01852 1192 FunFam Calcium-transporting ATPase 155 211 - -
Phco8g01852 1192 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 612 809 IPR023299 GO:0000166
Phco8g01852 1192 SUPERFAMILY HAD-like 603 1017 IPR036412 -
Phco8g01852 1192 FunFam Calcium-transporting ATPase 313 370 - -
Phco8g01852 1192 Pfam Ca2+-ATPase N terminal autoinhibitory domain 144 187 IPR024750 GO:0005516
Phco8g01852 1192 Gene3D - 289 481 - -
Phco8g01852 1192 PANTHER CATION TRANSPORTING ATPASE 229 1176 - -
Phco8g01852 1192 FunFam Calcium-transporting ATPase 360 481 - -
Phco8g01852 1192 SUPERFAMILY Calcium ATPase, transmembrane domain M 266 1176 IPR023298 -
Phco8g01852 1192 ProSitePatterns E1-E2 ATPases phosphorylation site. 607 613 IPR018303 -
Phco8g01852 1192 SFLD p-type atpase 587 964 IPR044492 -
Phco8g01852 1192 PRINTS H+-transporting ATPase (proton pump) signature 944 969 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco8g01852 1192 PRINTS H+-transporting ATPase (proton pump) signature 912 928 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco8g01852 1192 PRINTS H+-transporting ATPase (proton pump) signature 758 776 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco8g01852 1192 Pfam Cation transporter/ATPase, N-terminus 264 329 IPR004014 -
Phco8g01852 1192 MobiDBLite consensus disorder prediction 221 254 - -
Phco8g01852 1192 Pfam Cation transporting ATPase, C-terminus 997 1174 IPR006068 -
Phco8g01852 1192 NCBIfam calcium-translocating P-type ATPase, PMCA-type 240 1176 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Phco8g01852 1192 SUPERFAMILY Calcium ATPase, transduction domain A 384 478 IPR008250 -
Phco8g01852 1192 PRINTS P-type cation-transporting ATPase superfamily signature 805 816 - -
Phco8g01852 1192 PRINTS P-type cation-transporting ATPase superfamily signature 605 619 - -
Phco8g01852 1192 PRINTS P-type cation-transporting ATPase superfamily signature 827 837 - -
Phco8g01852 1192 PRINTS P-type cation-transporting ATPase superfamily signature 912 931 - -
Phco8g01852 1192 PRINTS P-type cation-transporting ATPase superfamily signature 936 948 - -
Phco8g01852 1192 PRINTS P-type cation-transporting ATPase superfamily signature 429 443 - -
Phco8g01852 1192 Gene3D - 313 1166 - -
Phco8g01852 1192 Gene3D - 602 957 IPR023214 -
Phco8g01852 1192 FunFam Calcium-transporting ATPase 929 1178 - -
Phco8g01852 1192 NCBIfam HAD-IC family P-type ATPase 350 521 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco8g01852 1192 NCBIfam HAD-IC family P-type ATPase 545 628 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco8g01852 1192 NCBIfam HAD-IC family P-type ATPase 879 992 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco8g01852 1192 SFLD C1.7: P-type atpase like 587 964 - -
Phco8g01852 1192 FunFam Calcium-transporting ATPase 615 812 - -
Phco8g01852 1192 Gene3D - 615 812 IPR023299 GO:0000166
Phco8g01852 1192 Gene3D - 157 211 - -
Phco8g01852 1192 FunFam Calcium-transporting ATPase 9 plasma membrane-type 459 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01852 Phco-Chr8 19565731 19585318 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01852 8 19565731 19585318 Phco8g01852 8 19565731 19585318 ECH
Phco8g01852 8 19565731 19585318 Phco7g02762 7 46620162 46642275 PCT