Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01846 ATGATCAGTGAGCCTCAGCAGCTCATAATTACATACTTAGTGCTGCCTTTGTCTTTAATCGGAACTAAAGATATAGACTTCTCCGAGAAAAAAGATGCCCTCCATATCCCCACCCCCCAAATAAAAGGAAATTTTAATCACACATACTACCATTTATTAGTAAATATCTGCGTGGCTAAAGAACCAGGTAAGGGTTCTTTGGCTATACGAGCCCAGGCTTCCAAGAAAGCACAAAATAGAGACACGTATACTGTGAGAATTGAAAAAACGAGACGGGAACACAAATGGGTGTCCAAGTTCTGTAACAGTATGGAATATAGATCAGTTTTCGTTGCTTTATTTGGTAGAACAAAAGGTTGGTTTAAGTGGGTGGTTGGAATGGGAGATGAGATTAAGACAAAAGAGAAAGAGAAGGATAAGAAGAGAAGGAAAGTGTGGCTCAAAAGAAAAGGTTCAGCAACAAAGGGGGTGGCGAGGGGGGTGGTGTTTGGCCAAGTGATGCGCTCAGGAGTTTGTGCATTACAGCAGACCCTCACAGCTGAGGCTGCTTCAGTGTTGAAGCACTCTCTGGGGTTGGCTCGGAGGAGGGGCCATGCACAGGTCACTCCTCTGCATGTCGCTGCCACTTTGCTCAGCCTAAGAGGCAGTTCCTTGAGAAAGGCTTGTCTCAAGTCTCAGCCTCACCAAACTTCTCATCCTCTTCAATGTAGGGCTCTTGAGCTGTGCTTCAATGTGGCTCTCAACAGGCTCCCAACATCACCTGCTCCTTTGATCCACACGCAGCCCTCTCTCTCCAATGCTCTCATTGCTGCATTGAAGAGAGCTCAGGCTCACCAGAGAAGGGGCTGCATAGAGCAACAGCAACAACAGCCTCTTCTCATCATCAAGGTTGAGCTGGAACACCTCATCACATCAATCCTTGATGATCCTAGTGTTAGCAGGGTTATGAGAGAGGCTGGTTTCTCTAGCACTGCTGTTAAGAACAACATAGAGGATTCTTCACCCCATTCTGTTTTTCAGTGTTACAATAGCTCTGGTGGTGTGTTTTCTTCTCCTTGCTCACCTTCTGCCAGTGAGAACCACAGGGAAACAACCACCAACCCTACCAATTTCAGGCAGACTCATCATTTCTTAACTTCTTATGCTTCTGAGTTCCACCCTTCACTTCTCTTTTCTCCGCTAAAGAGTTCACCAGCGTGTTCCTTCTCTGGTGCAGCTTCTTCTAGTAAGGATGATATCAGGGTTGTCCTGGATATTCTCCTGAGGAAGAAGAAAAAGAACACTGTGATTGTAGGTGACTCTGTGTCATTAACTGAGGGCCTTGTGGCAGAGCTAATGAGAAGGATAGAAAGGTCAGAAGTGCCTGATGAGTTAAAGTCAACCAATTTTATCAAATTCCAGATTTCACCTGTTTCTTTGAGTTGCATGAAAAGAGATGAAGTTGAAATGAAACTCTTGGAACTGAAACGGAAGGTGAATTCCGTTGCATCAGGAGAAAGGGGTGGCATTTTTTATGTTGGAGACCTGAAGTGGACCGTGGAGGAGACAGGTTTCAGTGACAAAGAGGAAGGGTCCCCAGAAAGAGAAATTTCTGGTTACAATCCAGTTGATCATTTAGTTTCGGAAGTTGGAAGGTTATTCTGTGACTGTGGAACCTCAAATAATGCTAAGGTGTGGCTCATGGCCACTGCTAGTTACCAAACATACATGAGGTGTCAAATGAGGCAACCCCCTCTTGAGAAGCAGTGGGCTCTTCAGGCTGTTCCTGTTCCATCAGGTGGACTTGACTTGAGTCTTCAAGCTCCCAGTGTCCTTGACTCAAAGATAACCATCTCTCAAAACCAATCTCATGTGCCTGAAACAAAGCCCTTCGGTAACATGGAGCTGCAGGATAGGCTCAATTGTTGTGAAGAATGTGCCTCCAATTATGAAAAAGAAGCCCAATTTCTTAGGTCAGATCAAAAGAAAATGATGCCATTCTGGCTTCGGTCTCATACCACAGAAGACCATAATAAGGATGAATTAGTCCAGTTGAAAAGAAAGTGGAATAGACTATGCCACTGTCTACACCAAAGCAAACAGATTCATAACCCATGCAACTGGAACAACAGTTATAATTCAGCAAGCTCCATATCTTTTGCGAACAATGCGACACATTGCTCCACCTTCAAACTTGTTCCTCGATTCCGGCGCCAACAATCATGCATCATTGAGTTCAATTTCGGCGACAAAAGGGAAGCAACAGAGCCAGTGTTAGATTCCCTGGAGGGCATGGAAGGTAAAGAAGTAAAGACTACTCTTGCTCTTGGCAATGGCGGTTCAGGTGAGACGGTGGGGGATATAACTGATGATAGAACACTGCAAAGAGCTCATATTTGTAAACTATTGCAGGAGAATGTGCCATGGCAGTCTGAGACTGTTCCTTCAATAGCAGAAGCCTTGATCGATTCCATATCAGCAAAGCAAAGTAACAATATGACTTGGTTACTAGTGCAAGGTAATGACACCATTGGGAAAAGAAGGTTGGCACTTGCAATTGCAGAATCAGTTTTTGACTCAACTGATGTGCTCCTTCAATTTGACATGCTAAAGAGAGAGACTTCAATTGCCCCATTTTCTGAAATGCTGACAGGAGCGCTGAAAACCCACCAACAGCTTGCGGTGCTAATAGAAAATGTTGACTTTGCTGATGCCCAGTTCAAGAAATTCCTCTCGGATGGGTTTGAAACAGGAAAGTTTGGAAATTCCACAGAAGAGAACTCAAGCCAAGTTATACTCATATTGGCAAGTGGTGGATCCACTAGCATCGAGGAGAAGAAAGAGGAATCGGTTATCAAGTTGTTATGGCAGGTTAGTGAAACCAAGCCTAACTTAGAGACTCAATCTGTCGCAACTAGGATTATAGAGCCTTGTTTGGGCAACAAAAGAAGGGCTGAACTTGATTTGTTTTCTAACACTAAGAGTTTTCAAGGGAGCAAGAAGAGAGTGTGTTCGAGACAAACAAGCTTTAACACTCTTGATCTGAACATGCAAGCTGATGAAGAGGGGGGTGAGGAGGGTAAAGCAGGAGAAAGTAGCCCTATTTCAAGTGATTTGAGTAGGGAAACAATAGGTGATCCACTGAGACAAAACGGATTTCTTGACTCGATTGAAAACCGGTTTGAGTTTAACACAAGTCCAGTTAAAGAGAGAGAGATGGCAGAGATGTTTTTGTGCAAGATAAAAGGGTGTTTTGAGGAGGTTTGTGGGAAGCAATGTTGGGAGAATTTAAGTGTAGATGAGAGGGTGATTGGGGATGTTTGTTTTGGGTGTGGTTATTTTAGCAACGAGCTGTTTGAGAAATGGCTGAAAAATGTTTTTAAAAGCAGCTTAAAAACGGTTAACATTGGAGGGAAGGAGGGTATAGTTTATAGACTTTGTTGTGGTGGTAAAGGAGATACAAAAGATAGTGGCTTCATGAGTTCTTCTCTGCCCAAGAGTATCCAACTTAATTACTTCATAGAGTGA 3507 0.4371 MISEPQQLIITYLVLPLSLIGTKDIDFSEKKDALHIPTPQIKGNFNHTYYHLLVNICVAKEPGKGSLAIRAQASKKAQNRDTYTVRIEKTRREHKWVSKFCNSMEYRSVFVALFGRTKGWFKWVVGMGDEIKTKEKEKDKKRRKVWLKRKGSATKGVARGVVFGQVMRSGVCALQQTLTAEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRGSSLRKACLKSQPHQTSHPLQCRALELCFNVALNRLPTSPAPLIHTQPSLSNALIAALKRAQAHQRRGCIEQQQQQPLLIIKVELEHLITSILDDPSVSRVMREAGFSSTAVKNNIEDSSPHSVFQCYNSSGGVFSSPCSPSASENHRETTTNPTNFRQTHHFLTSYASEFHPSLLFSPLKSSPACSFSGAASSSKDDIRVVLDILLRKKKKNTVIVGDSVSLTEGLVAELMRRIERSEVPDELKSTNFIKFQISPVSLSCMKRDEVEMKLLELKRKVNSVASGERGGIFYVGDLKWTVEETGFSDKEEGSPEREISGYNPVDHLVSEVGRLFCDCGTSNNAKVWLMATASYQTYMRCQMRQPPLEKQWALQAVPVPSGGLDLSLQAPSVLDSKITISQNQSHVPETKPFGNMELQDRLNCCEECASNYEKEAQFLRSDQKKMMPFWLRSHTTEDHNKDELVQLKRKWNRLCHCLHQSKQIHNPCNWNNSYNSASSISFANNATHCSTFKLVPRFRRQQSCIIEFNFGDKREATEPVLDSLEGMEGKEVKTTLALGNGGSGETVGDITDDRTLQRAHICKLLQENVPWQSETVPSIAEALIDSISAKQSNNMTWLLVQGNDTIGKRRLALAIAESVFDSTDVLLQFDMLKRETSIAPFSEMLTGALKTHQQLAVLIENVDFADAQFKKFLSDGFETGKFGNSTEENSSQVILILASGGSTSIEEKKEESVIKLLWQVSETKPNLETQSVATRIIEPCLGNKRRAELDLFSNTKSFQGSKKRVCSRQTSFNTLDLNMQADEEGGEEGKAGESSPISSDLSRETIGDPLRQNGFLDSIENRFEFNTSPVKEREMAEMFLCKIKGCFEEVCGKQCWENLSVDERVIGDVCFGCGYFSNELFEKWLKNVFKSSLKTVNIGGKEGIVYRLCCGGKGDTKDSGFMSSSLPKSIQLNYFIE 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01846 1168 Coils Coil 626 646 - -
Phco8g01846 1168 MobiDBLite consensus disorder prediction 1013 1035 - -
Phco8g01846 1168 Gene3D - 175 334 IPR036628 -
Phco8g01846 1168 Pfam Clp amino terminal domain, pathogenicity island component 192 217 IPR004176 -
Phco8g01846 1168 Pfam Clp amino terminal domain, pathogenicity island component 297 332 IPR004176 -
Phco8g01846 1168 SUPERFAMILY Double Clp-N motif 178 331 IPR036628 -
Phco8g01846 1168 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 167 1136 - -
Phco8g01846 1168 FunFam protein SUPPRESSOR OF MAX2 1 175 336 - -
Phco8g01846 1168 ProSiteProfiles Clp repeat (R) domain profile. 174 336 IPR004176 -
Phco8g01846 1168 Gene3D - 769 975 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01846 Phco-Chr8 19425961 19434928 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01846 8 19425961 19434928 Phco8g01846 8 19425961 19434928 ECH
Phco8g01846 8 19425961 19434928 Phco7g02767 7 46725936 46730074 PCT