Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01841 ATGGCGGTTTATAGAGGGAATAGCAAGAGTAAAGTTAAGGTGGTAGTTTGTAATGTAAGTAGCAGTGTTCACAAATTGAGAGTTTCGGTAGACACAAGAATAAACCTGAACCCAACGAATCAACCAACCAATCCCATAAACCCTAACTTCCACCTTTCTTCTTCAATGGCCACCCTCGACCCAATCCAAAACGGCACCACCAATCCCCTTCTATCGGACAATCCCGACCAAGCTGAACCTCCCTCCACCACCGCCGACGACGACCACACTACTGAGGCCGCTGCCGAGAAGCGGTGGCCGGGATGGCCCGGCCTCTGCGTGTTCCGCCTCATTGTGCCGGTCCTCAAAGTTGGAAGCATCATTGGCCGCAAAGGGGAGCTCATCAAGAAGACCTGCGAGGAAACGAAAGCTCGCATTCGAGTCCTCGACGGCGCGGTTGGCACGCCCGATCGAATCGTACTAATATCAGGGAAGGAAGAGCCAGAGGCACCACTTTCTCCTGCTATGGATGCTGTCATAAGGATTTTTAAACGTATCTCAGGGTTGTCTGAAATTGAGGGGGAGAATAAAGCAGCTGGGCTTGCATTTTGTTCTGTTCGTTTATTGGTGGCTTCAACGCAGGCTATCAATTTGATTGGAAAACAGGGTTCATTAATTAAATCTATACAAGAAAGTACCAGTGCTTCCGTTAGAGTACTTTCTGGAGATGAGGTTCCCTTTTATGCTGCTGCGGATGAGAGGATTGTTGAGCTGCAGGGAGAAGCCATGAAGGTCCTTATGGCTCTGGAAGCAGTAGTTGGGCACCTGAGGAAGTTTTTGATTGACCCCAGTGTTCTTCCCTTATTTGAGAAAAGTTACAATGCATCAATCTCCCAAGAGCGGCAAGTCGATACTACTTGGGTTGACAAACCATCACTGCATAGTGCTTCACAACCTAGCATTGTGAATGATATTCCTCTTTCATCAAAAAGGGAGTCTCTCTTTGCTGACCGTGAAAGCCATTTGGACTCATTGCTCCCTCCCTCTACAATGTCAATATATGGGCAAGATTCTTCACTTTCTAGTCTTCGTTCTTCAGCACTCAGTCGTTCCAGTGCTCCTCCTATTGTTACCACGGTAATACAAACAATGCAAATACCACTGTCCTATGCAGAGGACATTATTGGTATACAAGGGACTAATATTGATTACATTCGCCGCACCAGTGGAGCAATACTGACCGTGCAGGAGAGCCGGGTGCCTGATGAAATCATTGTGGAAATAAAAGGCACCTCATCTCAGGTTCAGACAGCACAACAGTTGATTCAGGAAGTTATAAGTAATCACAAAGAACCTGTCACGAGTAATTACAGCAGGTTAGATACAGGTCTGAGGTCTTCTTACCCTCAGCTGGGCAGTTCGTCTTATTCGTCATCTTCCTTGTCGTCGCAACCCTACAGCGGGTATGGATCTTCTGGTCTAGGAGGCTATAGTACTTTCAGACTTTGA 1488 0.4711 MAVYRGNSKSKVKVVVCNVSSSVHKLRVSVDTRINLNPTNQPTNPINPNFHLSSSMATLDPIQNGTTNPLLSDNPDQAEPPSTTADDDHTTEAAAEKRWPGWPGLCVFRLIVPVLKVGSIIGRKGELIKKTCEETKARIRVLDGAVGTPDRIVLISGKEEPEAPLSPAMDAVIRIFKRISGLSEIEGENKAAGLAFCSVRLLVASTQAINLIGKQGSLIKSIQESTSASVRVLSGDEVPFYAAADERIVELQGEAMKVLMALEAVVGHLRKFLIDPSVLPLFEKSYNASISQERQVDTTWVDKPSLHSASQPSIVNDIPLSSKRESLFADRESHLDSLLPPSTMSIYGQDSSLSSLRSSALSRSSAPPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQTAQQLIQEVISNHKEPVTSNYSRLDTGLRSSYPQLGSSSYSSSSLSSQPYSGYGSSGLGGYSTFRL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01841 495 SMART kh_6 195 270 IPR004087 GO:0003676
Phco8g01841 495 SMART kh_6 371 440 IPR004087 GO:0003676
Phco8g01841 495 SMART kh_6 104 177 IPR004087 GO:0003676
Phco8g01841 495 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 99 160 IPR036612 GO:0003723
Phco8g01841 495 ProSiteProfiles Type-1 KH domain profile. 196 265 - -
Phco8g01841 495 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 95 465 - -
Phco8g01841 495 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 368 441 IPR036612 GO:0003723
Phco8g01841 495 MobiDBLite consensus disorder prediction 38 96 - -
Phco8g01841 495 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 194 274 IPR036612 GO:0003723
Phco8g01841 495 CDD KH-I_PEPPER_rpt2_like 198 270 - -
Phco8g01841 495 Gene3D K Homology domain, type 1 370 445 IPR036612 GO:0003723
Phco8g01841 495 ProSiteProfiles Type-1 KH domain profile. 372 435 - -
Phco8g01841 495 Pfam KH domain 199 265 IPR004088 GO:0003723
Phco8g01841 495 Pfam KH domain 108 160 IPR004088 GO:0003723
Phco8g01841 495 Pfam KH domain 375 437 IPR004088 GO:0003723
Phco8g01841 495 MobiDBLite consensus disorder prediction 38 81 - -
Phco8g01841 495 CDD KH-I_PEPPER_rpt1_like 106 173 - -
Phco8g01841 495 Gene3D - 106 272 - -
Phco8g01841 495 ProSiteProfiles Type-1 KH domain profile. 105 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01841 Phco-Chr8 19361881 19369960 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01841 8 19361881 19369960 Phco8g01841 8 19361881 19369960 ECH
Phco8g01841 8 19361881 19369960 Phco7g02773 7 46825000 46834651 PCT