Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02773 ATGGCCACTGCCCAACCACTCCACAACGGTACCGCCGCCAACCTACTCTCGCCGGACAATGTCTCCGCCGCACAGCCACCGGCAGACACGGAGACTGACACCACCACGGCGGCACCTCCTCCGGAGAGGAGGTGGCTGGGGTGGCCGGGGGACTGCGTGTTCCGTCTCATCGTGCCAGTGGGGAAAGTTGGGAGCATCATAGGGCGCAAGGGAGAACTGATAAAGAAGATGTGTGAAGAGACACGATCTCGCATTCGCGTTCTCGACGCTCCTCTCGGCACTCCTGATCGAATTGTACTTGTATCTGGGAGGGAAGAGACAGAGGCAGTTCTTTCCCCTGCAATGGATGCGGTGATAAGGATCTTCAAGCGTGTCTTTGGATTGTCTGAAATTGATGCTGAGAATAAAGAATCTGCTGCTGGTCTTGCATTTTGTTCCATTCGTTTATTGGTTGCATCGACACAGGCTATTAGTTTGATTGGAAAGCAAGGCTCATTAATAAAGTCTATTCAGGAGAATACCAGTGCTTCTGTTAGAGTGCTGTCAGGAGATGAGGTACAATTTTATGCTACTGCGGATGAGAGGATTGTGGAAATTCAGGGAGAAACCTTGAAGGTCCTTAAAGCTCTGGAAGCAGTAGTTGGTCATCTGAGGAAATTTTTGGTTGATCACAGCGTTCTTCCCCTATTTGAGAGAAATTTCAATACACCAATCTCACAAGACCGTCAAGCAGAGACCTGGTCTGACAAGTCATTGCTGCATAGTACTTCACGTAGCAGCGTATTTCCTGATATGCCTCTTTCATCAAAAAGGGATTCTATCTTAGCTGAGCGTGAAAGTCAATTGGACTCATTACTCCCTTCTTCTACCATGTCTTTCTACGGGCAGGATTCTTCACTTTCTGGTGTGCGTTCTTCGGCTCTTGGCCGTGTTGGTGCTCCTATTGTTACTACGGTAATACAAACAATGCAAATACCACTATCCTATGCGGAAGACATCATTGGTATTCAAGGGACTAATATTGATTACATTCGTCGCACTAGTGGTGCTGTATTGACTGTGCAAGAGAGCAGGGTGCCTGATGAAATCGTTGTAGAAATAAAAGGCACCTCATCTGAGGTTCAAACAGCACAACAGTTAATTCAGGATTTTATAAGCACTCACAAAGAACCTGTCAGTATCAGTTACGGCAGGCTAGATGCAGGTTCGAGGTCTTCGTACTCTCAATTGGGCACTGCATCACGCCTCCCATCTTCGTTGTCATCACAACCATATTCAGGTTATGGAGCTTCTGGTTTAGGAGACTACAGTACTTTCAGGCTTTAA 1326 0.4729 MATAQPLHNGTAANLLSPDNVSAAQPPADTETDTTTAAPPPERRWLGWPGDCVFRLIVPVGKVGSIIGRKGELIKKMCEETRSRIRVLDAPLGTPDRIVLVSGREETEAVLSPAMDAVIRIFKRVFGLSEIDAENKESAAGLAFCSIRLLVASTQAISLIGKQGSLIKSIQENTSASVRVLSGDEVQFYATADERIVEIQGETLKVLKALEAVVGHLRKFLVDHSVLPLFERNFNTPISQDRQAETWSDKSLLHSTSRSSVFPDMPLSSKRDSILAERESQLDSLLPSSTMSFYGQDSSLSGVRSSALGRVGAPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAVLTVQESRVPDEIVVEIKGTSSEVQTAQQLIQDFISTHKEPVSISYGRLDAGSRSSYSQLGTASRLPSSLSSQPYSGYGASGLGDYSTFRL 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02773 441 MobiDBLite consensus disorder prediction 1 37 - -
Phco7g02773 441 MobiDBLite consensus disorder prediction 1 42 - -
Phco7g02773 441 Pfam KH domain 147 213 IPR004088 GO:0003723
Phco7g02773 441 Pfam KH domain 321 383 IPR004088 GO:0003723
Phco7g02773 441 Pfam KH domain 54 107 IPR004088 GO:0003723
Phco7g02773 441 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 314 387 IPR036612 GO:0003723
Phco7g02773 441 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 141 225 IPR036612 GO:0003723
Phco7g02773 441 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 41 107 IPR036612 GO:0003723
Phco7g02773 441 Gene3D - 51 221 - -
Phco7g02773 441 ProSiteProfiles Type-1 KH domain profile. 318 381 - -
Phco7g02773 441 ProSiteProfiles Type-1 KH domain profile. 144 213 - -
Phco7g02773 441 ProSiteProfiles Type-1 KH domain profile. 51 118 - -
Phco7g02773 441 CDD KH-I_PEPPER_rpt1_like 51 119 - -
Phco7g02773 441 Gene3D K Homology domain, type 1 316 390 IPR036612 GO:0003723
Phco7g02773 441 CDD KH-I_PEPPER_rpt2_like 148 218 - -
Phco7g02773 441 SMART kh_6 50 123 IPR004087 GO:0003676
Phco7g02773 441 SMART kh_6 317 386 IPR004087 GO:0003676
Phco7g02773 441 SMART kh_6 143 218 IPR004087 GO:0003676
Phco7g02773 441 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 38 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02773 Phco-Chr7 46825000 46834651 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02773 7 46825000 46834651 Phco7g02773 7 46825000 46834651 ECH
Phco8g01841 8 19361881 19369960 Phco7g02773 7 46825000 46834651 PCT