Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01834 ATGCCGCCGGCTCTGATGGATCCTCCATTACCGGAATCGTCGTCGGTGCTGTCTTTTTCCTCCGACATCGTTTTTCCGGGAACGGAGCCGGGTCATCGGCGATTCGGGGATCTTAGAGGTCTGCAGTGGCGTATAAATCTTGGGGTGTTGCCATCTTCTTCCATTGATGATCTTCGTCGAGCCACAGCTAATTCTAGAAGGAGGTATGCCAGTTTGAGAGGGCGCCTTTTGGTTGATCCTCATATTGTAAAGGATGAAAGTAGTGCGCCCAATCTTGTCATGGATAACCCACTTTCACAAAATCCAGACAGTACATGGAGTCGCTTTTTTCGCAATGCAGAGATAGAGAGAATGATTGATCAGGATTTGTCACGTTTATACCCAGAACATGGCAACTATTTCCAGACGCCAGGATGCCAAGTCATATTGAGACGAGTTTTGCTACTATGGTGTCACAGACACCCAGAGTGCGGTTACAGACAAGGAATGCATGAATTACTTGCTCCAGTGCTTTATGTACTCCAATATGATGTGGAGTGTCTTTCAGAAGTTCGAAAGCTTTATGAAGACCACTTCACTGACAGATTTGATGACCTCCTTTGTCAAGAGAATGATCTTTCTTACAACTTTGATTTTAAAAAATCTTCAGACTCGAAGGAGGATGGAATTGACTCCAATGGAAATGCAATGAAAATCAAGAGTCTTGATGAGCTTGACCCCAGCATACAGAACATTGTATTGGTAAGTGATGCTTATGGGGCAGAAGGTGAACTGGGCATTGTTTTATCTGAGAAATTCATCGAACATGATGCTTATTGTATGTTTGATGCTTTGATGAACGGGGCTCGTGGTTCAATTGCAATGATAGATTTCTTCTCTTATTCCCCTTTGCCTGGGTCCCATACTGGCTTGCCTCCTGTAATTGAAGCTTCTGCTGCATTGTATAATTTATTGTCTCATGTGGATTCATCTCTGCATGGCCATCTTGTTGATCTCGGGGTTGAACCCCAGTACTTTGCTCTCCGCTGGTTGCGAGTTTTATTTGGACGAGAATTTTCACTCAGCAACCTTTTAATAATCTGGGATGAAATATTCCTATCAGATAATAGTAAAGTGGAGAAACATGCTGAGGACAATGCAGACTCTGGTTTTAGGATCTTCAATTCGTCTAGAGGAGCATTTATCTGCGCTATGGCTGTGGCAATGATGCTTCATTTAAGATCTTCGCTTCTAGCTGCAGAAAATCCTACAACCTGTCTTCAGAGATTATTAAACTTCCCAGAGAACACTGATATTCAAAAACTAATAGAGAAGGCTAAATCCTTGCAGGCCCTTGCATTAAGTGCTGAGTTTTTGTCCACGAGACCTTCATTATTCGTCGAGTATTATAACCAGGCTAAACCAGTTATTGCCAGATCTCGCACCCTTTCATGTGACTCAATCTCTCCGAAAGCTCCTCTGAGTTTGGTACCTGAGAGCTACTGGGAAGAAAAGTGGAGAGTTGTCCACAACGCTGAAGAACTCAAACAAGATGCAGTAGAAAAGCAGGTTCCCACTCGGAAGAAGGGATGGACGGAAAAGGTAAAGTTCAGTTTGAAAACAGATTCTGACCCCGCTTCACCAAGCTCTAAGAGTGGTAAAAAGAAATCCAAGTCACCAGTTAGGCGCGGTTTGTTAGAAGATCTATCTAAGGAACTTGGCTTTGAGGAAGATACTGAAAATCCCTTCAATCTTGATAATCTGCCTGCAACAGTTGAAGAGGAGCAACGGGAAGACGGTTCGGAATGCAGCAACAGTGATTCTCCTGCAGATAGATGTCTAAGTCGAAACACAAGTGGTGTGGAAAACTCTCCTGCTATTTCTTGCTCGGCTAGCCCTCTTAACGAGGCCAATGATCACAAAAATGACTGTGAGAAGAGTAGTGTTGGGTCTAATTTATCATTTGATGGAATTAATGAAGCCTCACTTTGTAGTCCCGTAGATTCACCTCTTCCAATCTCTGATCATCCTGAGAACGCATCAGATACGACAGGGAGAAATAATAGTAATTCTGCTGGAAATTCAACCACGCATTCCAAGGAGAGAAAATTGAACAGATTTCAGTGGCTATGGAAGTTTGGGCGTAGCAATGGCGAGTTTACTTTGGAGAAAGGAAGTGATGCTACTGAGACAGTAAAACCTGCTAACAGTTGTGATAATCAAAGCAATACAGTACCCTCTTCTACAGCCAATGCACATTGTAGTTCTGTTGGCTACAAAGGGGAATCTACAGAGCAGAATGTGACGGCCACTATGAGGATTATTGGGCAGTCAATGCTTGAGCATATCCAGGTGATAGAGAGTGCTTTGCAACAGTGGGGCGAGGGAGCATCATTGGATAACATGTCTAACAATGTTGTGGTTGGTGTAGAGCAGTTGAGTCCCATGTCAGCTCTGAAGGAGCTACGTAAAATTAGCAATCTTTTATCTGAGATGTGA 2478 0.4338 MPPALMDPPLPESSSVLSFSSDIVFPGTEPGHRRFGDLRGLQWRINLGVLPSSSIDDLRRATANSRRRYASLRGRLLVDPHIVKDESSAPNLVMDNPLSQNPDSTWSRFFRNAEIERMIDQDLSRLYPEHGNYFQTPGCQVILRRVLLLWCHRHPECGYRQGMHELLAPVLYVLQYDVECLSEVRKLYEDHFTDRFDDLLCQENDLSYNFDFKKSSDSKEDGIDSNGNAMKIKSLDELDPSIQNIVLVSDAYGAEGELGIVLSEKFIEHDAYCMFDALMNGARGSIAMIDFFSYSPLPGSHTGLPPVIEASAALYNLLSHVDSSLHGHLVDLGVEPQYFALRWLRVLFGREFSLSNLLIIWDEIFLSDNSKVEKHAEDNADSGFRIFNSSRGAFICAMAVAMMLHLRSSLLAAENPTTCLQRLLNFPENTDIQKLIEKAKSLQALALSAEFLSTRPSLFVEYYNQAKPVIARSRTLSCDSISPKAPLSLVPESYWEEKWRVVHNAEELKQDAVEKQVPTRKKGWTEKVKFSLKTDSDPASPSSKSGKKKSKSPVRRGLLEDLSKELGFEEDTENPFNLDNLPATVEEEQREDGSECSNSDSPADRCLSRNTSGVENSPAISCSASPLNEANDHKNDCEKSSVGSNLSFDGINEASLCSPVDSPLPISDHPENASDTTGRNNSNSAGNSTTHSKERKLNRFQWLWKFGRSNGEFTLEKGSDATETVKPANSCDNQSNTVPSSTANAHCSSVGYKGESTEQNVTATMRIIGQSMLEHIQVIESALQQWGEGASLDNMSNNVVVGVEQLSPMSALKELRKISNLLSEM 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01834 825 FunFam TBC1 domain family member 5 307 451 - -
Phco8g01834 825 Gene3D - 307 450 - -
Phco8g01834 825 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 34 439 - -
Phco8g01834 825 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 99 284 - -
Phco8g01834 825 Pfam Rab-GTPase-TBC domain 268 369 IPR000195 -
Phco8g01834 825 Pfam Rab-GTPase-TBC domain 114 197 IPR000195 -
Phco8g01834 825 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 37 328 IPR035969 -
Phco8g01834 825 SMART tbc_4 38 414 IPR000195 -
Phco8g01834 825 ProSiteProfiles TBC/rab GAP domain profile. 33 368 IPR000195 -
Phco8g01834 825 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 303 443 IPR035969 -
Phco8g01834 825 MobiDBLite consensus disorder prediction 599 621 - -
Phco8g01834 825 MobiDBLite consensus disorder prediction 669 691 - -
Phco8g01834 825 MobiDBLite consensus disorder prediction 528 556 - -
Phco8g01834 825 MobiDBLite consensus disorder prediction 585 621 - -
Phco8g01834 825 MobiDBLite consensus disorder prediction 659 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01834 Phco-Chr8 19285659 19291047 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01834 8 19285659 19291047 Phco8g01834 8 19285659 19291047 ECH
Phco8g01834 8 19285659 19291047 Phco7g02782 7 46876443 46881511 PCT