Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01823 ATGGCAACTGAGAGTCCAATTAGGATATCTGAAGCTGGGGGGAAATGGCCAACTCTTAAGGAAGCTGCAATATTTGGTTCACCATCCCATCATATGGCAACAGAAGACCTGGGTATATTTTTGAATGGTCATAGGTTCCATGGCAGTGGAAAAGATGTGTTACCCAATCGAAGTGGCAGTGCACCTCCAAGCATGGAAGGCTCATTTCTTGCCAAAGAAAACTTATTATCCCAGAACACCACTAGAAATGTCAGCCTGGGATCTCTCAACAGAGCTGTGCAAAAATATGATAGTGGTAAAGGGTCCTTTCATTTGTCACAAGAAACACTTGCAACACACAAGGAGGAGTTTGAGGATGATTCAACCCAACAGCTGTATGATAATGAAATAGATAAGGGTAGTGGAAAATGGCATAGACTGGATGTGGCTTCAACATCATCTAAACACAAAAAATTATTACTGGAAGATCTTCTGCATACCATGTCACCTGTATATAATAAGTCTCTTGGAGTGGTGGATGAACTAATTGATGTAGATTCTGGTTCAAATTCTTCTCATGACCATTCTGTTACTACAGTGGATGCTATAAAACCTACTATTGGTGGAGATGATTTAAGAGTGTCATCATTTGTTGATTACCCTGCCCCTGTCACAAGATCATCATCTCTCAATTCCACTGGAAGCAGGGGTTTTAATCATTTGGATGTTACAATTGTAGAATCTCAATTAAGGGATCTCAGTGTATCTAATCTACCAAATTCAGAAAGTCAGAGTTATGAAGATAAATGGAAGAACAGCTTACAGAATAATTTGATGCAACAACACCACCAACAAAACTATCCATGTGAAGTTCCTAGCACCATTTCTCAAAGTGAAAAATGTGCATACATTGGTATGGAGCCGCCTCTTCACAGTTCAAGCAAGTTCTCATCTGATGTCCAGCCTGTACTGCCTGTACTGCATTCATCTGGGTATACACCTCCACTATATGCTACGGCAGCAGCTTATATGACCTCAACAAATCCATTCTACACTAATTTTCAGGCTTCAGGTCTATATTCTCCGCAATATGTAGGGGCATACCCTTTTAGTCCCACAGCTGTTCCTCCATATATTGCTGCTTACCCTCCTCATGGTTCTGTACCACTCGTTGATGGAGCTACTGGTTCTAGTTTTACTCCCCAAGCAGCAGGGGTTTCTTCTATTGTGGGAAACATTTCACACGGTGCTGAAATGCTACACGCAAACAAGGTTTTTGGACAATTTGGATTTCCTCTGCAGCCTTCTTTTGGTGAGCCTTTTTACATGCAATATCCTCAGCAACCTTTTGTGGAGGGATACAATGTATCAGGTCATCTGCTGACACCTAGAGCCAGTGTTGGTGGCCAAATTGGTCCTTATGATTCCCAAAAAAGGTCCAATAGTGGCGCTTACTTGGATGAAAAAAAAATACATAATCAGAGAAGTGGTGCTAGTTTGAATTCTAATAGAGGTGGGCTAATGCATCCTGGTTATTTTGGACACCCTTCAAACATGAGTTTCGAAACCCAGTATCCAAGTTCTCCACTTTCTAGACCAGTCCTGTCAGGATACCCAGAAAGTAGTCCTGGTCTTCCAGGTGGAACGAATGAAAGGAGACCTTCTCCTGCTTCTGGCAAAAACAGAGGTTTATTATCTGGGTGGCAAAGTCATAGAGCCTCAGACAGTGCTCACAACCCCAAAATTGCTATTTTTCTTGAAGAGTTAAAATCTGGCAAAGGTCGCAGATTTGAGCTATCTGACATTATTGGACACATAGTTGAATTTAGCACTGATCAGCATGGGAGCCGTTTTATACAGCAGAAGTTGGAAAACTGTGGTGTGGAAGAGAAGGAGTTAGTGTTCAAAGAGGTTCTTCCACATACTTCTAAATTAATGACTGATGTATTTGGCAATTACGTAATCCAAAAGTTTTTTGAGTATGGAAGCCCTGAGCAGAGGAAGGAACTTGCAAATTGTCTTCTTGGTCAGATACTGCCTTTAAGTCTTCAGATGTATGGTTGTCGTGTAATCCAAAAGGCACTTGAGGTTATCAATCTTGAACAGAAATCTCAGCTTGTTCATGAGCTAGATGGAAATGTCATGAGATGTGTCCGTGACCAAAATGGGAATCATGTAATACAGAAGTGCATTGAATCTATTCCAACTAAAAACATTGACTTTATAATATCTGCATTTCGTGGTCAAGTTGCTATTCTATCTATGCATCCTTATGGTTGCCGAGTCATACAGAGAGTTCTAGAGCATTGTTCAGACGAGGTTCAGTGTCAGTTCATTGTGGATGAAATCTTGGAGTCAGTTTTAACTCTTGCTCAGGACCAGTATGGTAATTATGTTGCTCAGCATGTGTTGGAGAGAGGAAAGTCTCAGGAAAGGAGCCAAATTATTAGCAAGCTTTCAGGACATATTGTTCAATTAAGCCAGCATAAATTTGCATCAAATGTTGTTGAGAAATGCTTGGAGTATGGTGATTCCACTGAACGACAGCTGTTAATTGCAGAGATTGTTGGACAAGACAAACAACACGATAATTTGTTGACGATGATGAAAGACCAATTTGCAAATTATGTGATCCAGAGGGTTCTTGAGATCTGTTCTGAAAATCAAAGAGCAATGTTACTTTCTCGCATAAGGCTTCATGCTCATGCTTTGAAGAAATACACTTACGGAAAACACATTGTGTCTCGGTTTGAACAGCTACTTGGGGAAGAGAGTCAAACTCCTGGATCTTGA 2772 0.408 MATESPIRISEAGGKWPTLKEAAIFGSPSHHMATEDLGIFLNGHRFHGSGKDVLPNRSGSAPPSMEGSFLAKENLLSQNTTRNVSLGSLNRAVQKYDSGKGSFHLSQETLATHKEEFEDDSTQQLYDNEIDKGSGKWHRLDVASTSSKHKKLLLEDLLHTMSPVYNKSLGVVDELIDVDSGSNSSHDHSVTTVDAIKPTIGGDDLRVSSFVDYPAPVTRSSSLNSTGSRGFNHLDVTIVESQLRDLSVSNLPNSESQSYEDKWKNSLQNNLMQQHHQQNYPCEVPSTISQSEKCAYIGMEPPLHSSSKFSSDVQPVLPVLHSSGYTPPLYATAAAYMTSTNPFYTNFQASGLYSPQYVGAYPFSPTAVPPYIAAYPPHGSVPLVDGATGSSFTPQAAGVSSIVGNISHGAEMLHANKVFGQFGFPLQPSFGEPFYMQYPQQPFVEGYNVSGHLLTPRASVGGQIGPYDSQKRSNSGAYLDEKKIHNQRSGASLNSNRGGLMHPGYFGHPSNMSFETQYPSSPLSRPVLSGYPESSPGLPGGTNERRPSPASGKNRGLLSGWQSHRASDSAHNPKIAIFLEELKSGKGRRFELSDIIGHIVEFSTDQHGSRFIQQKLENCGVEEKELVFKEVLPHTSKLMTDVFGNYVIQKFFEYGSPEQRKELANCLLGQILPLSLQMYGCRVIQKALEVINLEQKSQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTKNIDFIISAFRGQVAILSMHPYGCRVIQRVLEHCSDEVQCQFIVDEILESVLTLAQDQYGNYVAQHVLERGKSQERSQIISKLSGHIVQLSQHKFASNVVEKCLEYGDSTERQLLIAEIVGQDKQHDNLLTMMKDQFANYVIQRVLEICSENQRAMLLSRIRLHAHALKKYTYGKHIVSRFEQLLGEESQTPGS 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01823 923 Gene3D - 576 919 IPR011989 -
Phco8g01823 923 FunFam Pumilio homolog 1 isoform 2 574 920 - -
Phco8g01823 923 ProSiteProfiles Pumilio RNA-binding repeat profile. 775 810 IPR001313 GO:0003723
Phco8g01823 923 ProSiteProfiles Pumilio RNA-binding repeat profile. 847 888 IPR001313 GO:0003723
Phco8g01823 923 SUPERFAMILY ARM repeat 589 910 IPR016024 -
Phco8g01823 923 Pfam Pumilio-family RNA binding repeat 598 632 IPR001313 GO:0003723
Phco8g01823 923 Pfam Pumilio-family RNA binding repeat 857 890 IPR001313 GO:0003723
Phco8g01823 923 Pfam Pumilio-family RNA binding repeat 815 848 IPR001313 GO:0003723
Phco8g01823 923 Pfam Pumilio-family RNA binding repeat 780 812 IPR001313 GO:0003723
Phco8g01823 923 Pfam Pumilio-family RNA binding repeat 713 737 IPR001313 GO:0003723
Phco8g01823 923 Pfam Pumilio-family RNA binding repeat 670 703 IPR001313 GO:0003723
Phco8g01823 923 Pfam Pumilio-family RNA binding repeat 742 777 IPR001313 GO:0003723
Phco8g01823 923 Pfam Pumilio-family RNA binding repeat 637 664 IPR001313 GO:0003723
Phco8g01823 923 ProSiteProfiles Pumilio RNA-binding repeat profile. 811 846 IPR001313 GO:0003723
Phco8g01823 923 ProSiteProfiles Pumilio RNA-binding repeat profile. 738 774 IPR001313 GO:0003723
Phco8g01823 923 MobiDBLite consensus disorder prediction 510 528 - -
Phco8g01823 923 ProSiteProfiles Pumilio RNA-binding repeat profile. 594 629 IPR001313 GO:0003723
Phco8g01823 923 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 574 914 IPR033133 GO:0003723
Phco8g01823 923 ProSiteProfiles Pumilio RNA-binding repeat profile. 630 665 IPR001313 GO:0003723
Phco8g01823 923 ProSiteProfiles Pumilio RNA-binding repeat profile. 702 737 IPR001313 GO:0003723
Phco8g01823 923 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 295 912 - -
Phco8g01823 923 SMART pum_5 853 888 IPR001313 GO:0003723
Phco8g01823 923 SMART pum_5 666 701 IPR001313 GO:0003723
Phco8g01823 923 SMART pum_5 811 846 IPR001313 GO:0003723
Phco8g01823 923 SMART pum_5 738 774 IPR001313 GO:0003723
Phco8g01823 923 SMART pum_5 702 737 IPR001313 GO:0003723
Phco8g01823 923 SMART pum_5 594 629 IPR001313 GO:0003723
Phco8g01823 923 SMART pum_5 775 810 IPR001313 GO:0003723
Phco8g01823 923 SMART pum_5 630 665 IPR001313 GO:0003723
Phco8g01823 923 ProSiteProfiles Pumilio RNA-binding repeat profile. 666 701 IPR001313 GO:0003723
Phco8g01823 923 MobiDBLite consensus disorder prediction 480 567 - -
Phco8g01823 923 CDD Pumilio 589 909 IPR033712 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01823 Phco-Chr8 19078783 19087377 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01823 8 19078783 19087377 Phco7g02796 7 47025099 47032417 PCT