Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02796 ATGGCAACTGAGAGTCCAATTAGAATCTCCGAAGCTGGGGGTAAATGGCCCTCGCATAAGGAAGCTACAGCTTTCGGTTCAACATCTCATAACATGGCGACAGAGGATTTGGGTATACTTTTGAAGGGCCATAGGTTCCACGGTGGGAGAAAGGATGTGACACCAAATCGCAGTGGCAGTGCACCTCCCAGCATGGAAGGCTCATTTTTGGCCATAGAAAACCTCTTACCCCAGCAGATCATCACCCAAAATGCAAGCTTTGCAGCTCTAAGCAGTACGATGCAAAATTGCGAATCTGAAGAACAATTGCGAGCTGATCCAGCTTATTTGGCATATTACAGTTCCAATGTCAACCTAAACCCTAGACTTCCTCCCCCACTTACATCCTGGGAAAATCGCCATCTAGGACGTCATATTGGCAGTTTTAGAAATAATTGGAGAATGTCTGCTGATAGCGATAAAAGTTCTCTACCTTTCCCTCAAAGGACTCTTTCCACACACAAGGAGGAGTTGGAAGATGAATCACACCAACCACCATATGATGACGAATTCATTAAGGCAAGCGGATTTTGGCGTAGACCTGATGCAGCTTCATTGGCATCTCAACCTAAAAATGTGGTTGAATTAATTCAGGAGGATTTTCCTCGCACCATGTCACCTGTATATAATAAGTCTCATTCCGAAAGTCACGGACTGGTGGATAAACCAATTGACTTAGAAGTTGGTTCTAGTTCTTCTCATGACCCCCCTATTACTACAGTAGAGGCTGCTAAACCTACTATAGGAAGGGTCTCATCAATTGTTGATACCCATGCCCCAGTTGCCAGCACATCATCTCTTGAATCCACTGGCAGCATTGGTGTTAGTCACTTAGACATTGCAACTGTTGCATCTCAACTAAAGGCTCTTGGTCTATCTAATCTACCACACTCAGAAAGTCTGAGTTACGAAAAGACAAGCTACCAGAACAATTTGATGCAACGCCCAGGATTCCAGCAACAAAACAATGCATCTGATATACCTAGTGTCAATTCTCAAAATGTAAATTCTATGTATGTTGGTAGGGAACAGTTTCCTTTTAATTCAAGCAAGTACTCCAATGTCCAGCCACTACTGCAGTCGTCTGGGTTTACACCTCCCCTATATGCCACAGCAGCTGCTTATATGAACTCAGCAAATCCATTTTACACAAATATGCAGGCCTCAGGTATGTATACTCCGCAATATGTTAGTGGATACACTGTAAATCCCACAGTTTTTCCTCCATATGTTACTGCATACCCTCCTCATGGTGCTGTGCCATTTGTTGTTGATGGAGCTACTAGTTCTAGTTATACTCCACTAACACCTGGGGTTTCAACTGGGGGAAACATTTCACATGGAACTGAAATGGTACAGGCAAACAAGTACCTTGGGCAATTTGGATTTCCTCTGCCACCTTCTTTTGGTGATCCCATGTACATGCAATATCATCAGCAGCCTTTTGTGGAGGGATATGGTATTTCTGGTCATTTTGATCCACTGGCACCTAGAGCAAGTGGTGTTAACCAAATTAGCCCTTATGATTCACAAAAAAGGCCCAGTACTGGTACTTATTTGGATGATAAAAAAACACCTGATCAGAGATCTGCTACTAATATAAACTCCAGAAGAGGCGGATTATTGATTCCTAGTTATTTTGGACACATGCCAAACATGGGTATTTTAATGCAGTATCCAAGTTCACTACTTCCTAGCCCAGTTTTATCAGGATACCCAGAAGGAAGTCCCGGCCTTCTAGGTGGTAATAATGAAATAAAACTTTCCCCAGCTTCTGGTAGAAATGGAGGCATAATATCTGGATGGCAAGGTCAGAGATCATTTGACAGTGGTCATGACCCCAAAATTGTTAATTTTCTTGAAGACTTAAAATCTGGCAAAGGTCGGAGATTTGAGCTATATGATATTATTGGACATATTGTTGAATTTAGCTCTGATCAACATGGAAGTCGATTTATACAGCAGAAGTTGGAAAGTTGCAGTGTTGAAGAGAAGACATTGGTGTTTAAGGAGGTTCTTCCACATGCTTCTAAATTAATGACTGATGTATTTGGCAACTACGTAATACAGAAGTTTTTTGAGTATGGAAGCCCTGAGCAGAGGAGGGAACTTGCAGATCGACTGGTTGGCCAGATACTACCTCTAAGTCTGCAGATGTATGGCTGTCGCGTAATCCAAAAGGCACTTGAGGTTATTGAGCTTGAACAGAAAGCTCAGCTTGTTCATGAGCTAGATGGAAATGTTATGAGATGTGTTCGTGACCAGAACGGTAACCATGTAATTCAAAAGTGCATTGAATCGATTCCAACCAAAAAAATTAGTTTTATACTATCTGCATTTTGTGGGCAAGTTGCTATTCTATCAATGCATCCCTATGGATGCCGAGTCATACAGAGAGTCCTAGAACATTGCACAGACGAGAGTCGATGTCAGTTTATTGTGGATGAAATCTTGGAGTCAGTTTATGATCTTGCTCAGGACCAGTATGGTAATTATGTGTCACAGCATGTCTTGGAGAGAGGAAAGCCTCAAGAAAGGAGCCAAATTATCAGCAAGTTGTCAGGACATATTGTTGAATTAAGCCAGCATAAGTTTGCTTCAAATGTTGTAGAGAAATGTTTGGAGTATGGTGATGCCACTGAACGGGAGATGCTAATTGCAGAGATATTTGGGCATGGTGAACAAAGTGATAATTTATTGATAATGATGAAAGATCAATTTGCTAATTATGTGGTCCAGAAGGTCATTGATATCTGTTCTGAAAAACAGCAAGCAATATTACTTTCTCAAGTAAGAATTCATGCTCATGCTTTGAAGAAATACACTTATGGAAAACACATTGTGGCTCGGTTGGAACATCAATTTGGAGAGAATCAAACACCTGGCTCGTGA 2931 0.4156 MATESPIRISEAGGKWPSHKEATAFGSTSHNMATEDLGILLKGHRFHGGRKDVTPNRSGSAPPSMEGSFLAIENLLPQQIITQNASFAALSSTMQNCESEEQLRADPAYLAYYSSNVNLNPRLPPPLTSWENRHLGRHIGSFRNNWRMSADSDKSSLPFPQRTLSTHKEELEDESHQPPYDDEFIKASGFWRRPDAASLASQPKNVVELIQEDFPRTMSPVYNKSHSESHGLVDKPIDLEVGSSSSHDPPITTVEAAKPTIGRVSSIVDTHAPVASTSSLESTGSIGVSHLDIATVASQLKALGLSNLPHSESLSYEKTSYQNNLMQRPGFQQQNNASDIPSVNSQNVNSMYVGREQFPFNSSKYSNVQPLLQSSGFTPPLYATAAAYMNSANPFYTNMQASGMYTPQYVSGYTVNPTVFPPYVTAYPPHGAVPFVVDGATSSSYTPLTPGVSTGGNISHGTEMVQANKYLGQFGFPLPPSFGDPMYMQYHQQPFVEGYGISGHFDPLAPRASGVNQISPYDSQKRPSTGTYLDDKKTPDQRSATNINSRRGGLLIPSYFGHMPNMGILMQYPSSLLPSPVLSGYPEGSPGLLGGNNEIKLSPASGRNGGIISGWQGQRSFDSGHDPKIVNFLEDLKSGKGRRFELYDIIGHIVEFSSDQHGSRFIQQKLESCSVEEKTLVFKEVLPHASKLMTDVFGNYVIQKFFEYGSPEQRRELADRLVGQILPLSLQMYGCRVIQKALEVIELEQKAQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTKKISFILSAFCGQVAILSMHPYGCRVIQRVLEHCTDESRCQFIVDEILESVYDLAQDQYGNYVSQHVLERGKPQERSQIISKLSGHIVELSQHKFASNVVEKCLEYGDATEREMLIAEIFGHGEQSDNLLIMMKDQFANYVVQKVIDICSEKQQAILLSQVRIHAHALKKYTYGKHIVARLEHQFGENQTPGS 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02796 976 Gene3D - 629 973 IPR011989 -
Phco7g02796 976 MobiDBLite consensus disorder prediction 512 548 - -
Phco7g02796 976 SMART pum_5 792 827 IPR001313 GO:0003723
Phco7g02796 976 SMART pum_5 829 864 IPR001313 GO:0003723
Phco7g02796 976 SMART pum_5 865 900 IPR001313 GO:0003723
Phco7g02796 976 SMART pum_5 720 755 IPR001313 GO:0003723
Phco7g02796 976 SMART pum_5 756 791 IPR001313 GO:0003723
Phco7g02796 976 SMART pum_5 684 719 IPR001313 GO:0003723
Phco7g02796 976 SMART pum_5 907 942 IPR001313 GO:0003723
Phco7g02796 976 SMART pum_5 648 683 IPR001313 GO:0003723
Phco7g02796 976 ProSiteProfiles Pumilio RNA-binding repeat profile. 907 942 IPR001313 GO:0003723
Phco7g02796 976 ProSiteProfiles Pumilio RNA-binding repeat profile. 756 791 IPR001313 GO:0003723
Phco7g02796 976 ProSiteProfiles Pumilio RNA-binding repeat profile. 684 719 IPR001313 GO:0003723
Phco7g02796 976 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 109 966 - -
Phco7g02796 976 ProSiteProfiles Pumilio RNA-binding repeat profile. 829 864 IPR001313 GO:0003723
Phco7g02796 976 ProSiteProfiles Pumilio RNA-binding repeat profile. 720 755 IPR001313 GO:0003723
Phco7g02796 976 ProSiteProfiles Pumilio RNA-binding repeat profile. 648 683 IPR001313 GO:0003723
Phco7g02796 976 MobiDBLite consensus disorder prediction 1 26 - -
Phco7g02796 976 FunFam Pumilio homolog 1 isoform 2 627 974 - -
Phco7g02796 976 Pfam Pumilio-family RNA binding repeat 767 790 IPR001313 GO:0003723
Phco7g02796 976 Pfam Pumilio-family RNA binding repeat 869 902 IPR001313 GO:0003723
Phco7g02796 976 Pfam Pumilio-family RNA binding repeat 652 686 IPR001313 GO:0003723
Phco7g02796 976 Pfam Pumilio-family RNA binding repeat 913 943 IPR001313 GO:0003723
Phco7g02796 976 Pfam Pumilio-family RNA binding repeat 724 757 IPR001313 GO:0003723
Phco7g02796 976 Pfam Pumilio-family RNA binding repeat 689 720 IPR001313 GO:0003723
Phco7g02796 976 Pfam Pumilio-family RNA binding repeat 834 866 IPR001313 GO:0003723
Phco7g02796 976 Pfam Pumilio-family RNA binding repeat 796 831 IPR001313 GO:0003723
Phco7g02796 976 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 628 968 IPR033133 GO:0003723
Phco7g02796 976 ProSiteProfiles Pumilio RNA-binding repeat profile. 865 900 IPR001313 GO:0003723
Phco7g02796 976 CDD Pumilio 643 964 IPR033712 GO:0003723
Phco7g02796 976 SUPERFAMILY ARM repeat 634 965 IPR016024 -
Phco7g02796 976 ProSiteProfiles Pumilio RNA-binding repeat profile. 792 828 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02796 Phco-Chr7 47025099 47032417 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01823 8 19078783 19087377 Phco7g02796 7 47025099 47032417 PCT