Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01819 ATGTCCGTTTCTATGAGAGATTTGGATCCAGCTTTCAAGGGAGCTGGCCAAAAGGCTGGACTTGAAATATGGCGTATTGAGAATTTTAATCCAGTTCCTATCCCTCAGTCATCTTATGGAAAGTTTTTCACTGGGGATTCCTATATGATCTTGAAGACAACTGCTTCAAAAAGTGGTGCTCTGCGTTATGATATCCATTATTGGCTTGGTAAAAAGACCAGTCAGGATGAAGCTGGTGTTGCAGCCATCAGGACAGTCGAGTTGGATGCAGCCCTGGGAGGACGGGCTGTTCAGTATCGTGAAGTACAAGGCCATGAAACTGAAAAGTTCCTTTCTTATTTCAAACCATGCATCATACCTCAAGAAGGTGGAGTTTCCTCTGGTTTTAAACATGTTGAGGCCGAAGAACATACGATACGGTTGTTTGTATGCAAAGGGAAACATGTGGTTCCATTTGCTCGATCTTCACTAAACCATGATGATATTTTTATTCTGGATACTGAGTCCAAAATTTTCCAATTTAATGGTTCCAATTCATGTATTCAAGAAAGGGCTAAAGCATTGGAAGTTGTACAGTTTATTAAGGATACTTACCATGATGGGAAATGTGAGATAGCTTCCATTGAGGATGGAAAGTTGATGTCTGATGCTGAAACTGGAGAATTTTGGGGTTGCTTTGGGGGCTTTGCTCCTCTTCCACGGAAAACAGTCAGTGATGACGATAAGTCTGCTGATTCTCATCCTCCAAAGCTACTTTGTGTTGACAAGGGGAAGACAGAACCTGTAGAAGCTGATTCTTTGACAAAGGAAATGCTGGAGACAAACAAATGCTATATTATAGATTGTGGATTGGAAGTGTTTGCATGGATGGGAAGAAACACATCTCTTGATGAAAGAAAAGTTGCAAGTGGAGCTGCAGATAAGTTAGTCAGTGGCACTGGTCGACCAAAGTCCCATATAATTCGTGTAATTGAAGGATTTGAAACAGTAATGTTCAAGTCCAAGTTTGATTCTTGGCCTCAGACAACTCAAGTAATGTCTGAAGAGGGTCGTGGCAAGGTAGCAGCACTTCTAAAACGTCAAGGATTGGATGTCAAGGGTCTCCTAAAATCTGAACCTGTAAAAGAAGAACCTCAACCCTACATAGATTGCACAGGCCATTTGCAGGTTTGGCGTGTTAATGACAAGGATAAGATTCTTCTTCCAGCCACTGATCAGTCAAAATTTTACAATGGAGATTGCTACATCTTTCAATATTCATATCCTGGAGAAGATAAGGAAGAGCATCTTATAGGAACATGGATTGGAAAGAATAGTGTTGAGGAAGAGAGGGCTTCAGCTCTTTCACTAGCAAGCAAAATGGTTGAGTCAATGAAGTTTCTTCCTTCCCAGGTTCGTATCTATGAAGGCAGTGAACCAATTCAATTTCATGCCATCCTGCAAAGCTGTATTGTTTTCAAGGGTGGACTTAGTGATGGATACAAGAATTACATTGCAGAGAAGGAAATTCCAGATGAGACATACAGCGAGGATGGTGTGGCATTATTCCGCATCCAGGGCTTTGGACCCGACAATATGCAAGCTATACAAGTTGAACCAGTTGCTTCCTCCTTGAATTCCACTTATTGTTACATACTTCATAGCGGGTCCACTGTTTTTACTTGGTCTGGAGGTTTAGCAACTTCAGATGATCAAGAGCTTCTTGACAGAATGCTGGATTTGATTAAGCCGGATTTACAAAGCAAATCACATAAGGAAGGCGTAGAATCGGAACTGTTTTGGGATTTGTTGGGCGGAAAATCAGAATATCCCAGTCAAAAGATCGCGAGGGATGAAGAAAGTGACCCTCACCTAGTTTCTTGCGACTTCTCAAAAGGAAATTTAAAGGTGAAAGAGATATACAACTTTTCCCAGGATGATTTGATGACAGAAGATATTTACATCTTGGATTGTCACTCTGAAATCTTCGTCTGGGTTGGCCAGCAGGTTGACCCAAAGAGTAGAATGCAGGCTCTAACAATTGGTGAGAAATTTCTTGAGCATGATTTTCTTCTAGAAAAATTATCTCGTGAAGCTCCAATATATGTTGTCATGGAAGGTAACGAGCCACCTTTCTTCACTCGCTTTTTTAAATGGGAGTCTGCAAAATCCACAATGCTGGGAAACTCGTTTCAGAGGAAGCTTGCAATCGTCAAAAATGGGGGAGCGGCACTAGTACTTAAACATAAACGAAGAGCATCAGTATCTTATGGGGGAAGGTCTGGTGGTGTGCCAGATAAATCTCAGCGTTCCCGCAGCATGTCGGTCAGTCCTGATCGTGTTCGTGTGAGGGGCAGATCTCCAGCCTTTAATGCACTAGCAGCTAATTTTGAGAACACAAATACTAGGAACCTTTCAACTCCACCTCCAATGGTTAGAAAACTGTACCCAAAATCTGGCGCACAGGATACAGCAAAACCGGCACCTAAATTTTCAGCCATATCTCATCTTACTTCTAGTTTTGAACAACCATCAGCTCGAGAAAATTTGATTCCTCGGTCCCAAAAAGTGAGTTTAGTTACCGCCATATCAAACCCCGAGATAATTGCCGAGGGGGCTTCTATGAGCAGGAGAATAGAATCCCTTACCATAGAGGAGGATGCGAAAGAGGGTGAAGCTGAAGATGATGAAAGTCTCCCAGTTTACCCATATGATCGCATTAACACAGAATCTACAGATCCTGTAACAGATATTGACGTTACTAAACGAGAGGCTTATTTGTCACCTGCGGAGTTCCAAGAGAAATTAGGGATGGCTAGGACGGAATTTTGCAAGTTACCAAAATGGAAACAGAACAAACTCAAGATGGCAGTTCAGTTGTTCTGA 2865 0.4199 MSVSMRDLDPAFKGAGQKAGLEIWRIENFNPVPIPQSSYGKFFTGDSYMILKTTASKSGALRYDIHYWLGKKTSQDEAGVAAIRTVELDAALGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGVSSGFKHVEAEEHTIRLFVCKGKHVVPFARSSLNHDDIFILDTESKIFQFNGSNSCIQERAKALEVVQFIKDTYHDGKCEIASIEDGKLMSDAETGEFWGCFGGFAPLPRKTVSDDDKSADSHPPKLLCVDKGKTEPVEADSLTKEMLETNKCYIIDCGLEVFAWMGRNTSLDERKVASGAADKLVSGTGRPKSHIIRVIEGFETVMFKSKFDSWPQTTQVMSEEGRGKVAALLKRQGLDVKGLLKSEPVKEEPQPYIDCTGHLQVWRVNDKDKILLPATDQSKFYNGDCYIFQYSYPGEDKEEHLIGTWIGKNSVEEERASALSLASKMVESMKFLPSQVRIYEGSEPIQFHAILQSCIVFKGGLSDGYKNYIAEKEIPDETYSEDGVALFRIQGFGPDNMQAIQVEPVASSLNSTYCYILHSGSTVFTWSGGLATSDDQELLDRMLDLIKPDLQSKSHKEGVESELFWDLLGGKSEYPSQKIARDEESDPHLVSCDFSKGNLKVKEIYNFSQDDLMTEDIYILDCHSEIFVWVGQQVDPKSRMQALTIGEKFLEHDFLLEKLSREAPIYVVMEGNEPPFFTRFFKWESAKSTMLGNSFQRKLAIVKNGGAALVLKHKRRASVSYGGRSGGVPDKSQRSRSMSVSPDRVRVRGRSPAFNALAANFENTNTRNLSTPPPMVRKLYPKSGAQDTAKPAPKFSAISHLTSSFEQPSARENLIPRSQKVSLVTAISNPEIIAEGASMSRRIESLTIEEDAKEGEAEDDESLPVYPYDRINTESTDPVTDIDVTKREAYLSPAEFQEKLGMARTEFCKLPKWKQNKLKMAVQLF 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01819 954 ProSiteProfiles Headpiece (HP) domain profile. 889 954 IPR003128 GO:0003779|GO:0007010
Phco8g01819 954 SUPERFAMILY Actin depolymerizing proteins 218 341 - -
Phco8g01819 954 Gene3D Severin 374 514 IPR029006 -
Phco8g01819 954 CDD gelsolin_S4_like 380 479 - -
Phco8g01819 954 SUPERFAMILY Actin depolymerizing proteins 589 711 - -
Phco8g01819 954 FunFam Villin-like 1 607 728 - -
Phco8g01819 954 SUPERFAMILY Actin depolymerizing proteins 376 520 - -
Phco8g01819 954 MobiDBLite consensus disorder prediction 878 905 - -
Phco8g01819 954 FunFam Gelsolin 514 606 - -
Phco8g01819 954 SUPERFAMILY Actin depolymerizing proteins 135 238 - -
Phco8g01819 954 SMART VHP_1 919 954 IPR003128 GO:0003779|GO:0007010
Phco8g01819 954 CDD gelsolin_S1_like 12 124 - -
Phco8g01819 954 FunFam Villin-4 243 349 - -
Phco8g01819 954 Gene3D Severin 133 242 IPR029006 -
Phco8g01819 954 SUPERFAMILY VHP, Villin headpiece domain 881 954 IPR036886 GO:0003779|GO:0007010
Phco8g01819 954 CDD gelsolin_S3_like 249 338 - -
Phco8g01819 954 Gene3D Villin headpiece domain 892 954 IPR036886 GO:0003779|GO:0007010
Phco8g01819 954 CDD gelsolin_S5_like 511 602 - -
Phco8g01819 954 Gene3D Severin 243 353 IPR029006 -
Phco8g01819 954 SUPERFAMILY Actin depolymerizing proteins 9 147 - -
Phco8g01819 954 CDD gelsolin_S6_like 615 712 - -
Phco8g01819 954 Gene3D Severin 515 606 IPR029006 -
Phco8g01819 954 Gene3D Severin 607 729 IPR029006 -
Phco8g01819 954 PANTHER VILLIN 6 944 IPR007122 GO:0051015
Phco8g01819 954 FunFam Villin-4 379 513 - -
Phco8g01819 954 SUPERFAMILY Actin depolymerizing proteins 504 608 - -
Phco8g01819 954 PRINTS Gelsolin family signature 586 605 IPR007122 GO:0051015
Phco8g01819 954 PRINTS Gelsolin family signature 638 660 IPR007122 GO:0051015
Phco8g01819 954 PRINTS Gelsolin family signature 667 686 IPR007122 GO:0051015
Phco8g01819 954 PRINTS Gelsolin family signature 318 339 IPR007122 GO:0051015
Phco8g01819 954 PRINTS Gelsolin family signature 405 421 IPR007122 GO:0051015
Phco8g01819 954 PRINTS Gelsolin family signature 430 448 IPR007122 GO:0051015
Phco8g01819 954 PRINTS Gelsolin family signature 526 546 IPR007122 GO:0051015
Phco8g01819 954 PRINTS Gelsolin family signature 463 483 IPR007122 GO:0051015
Phco8g01819 954 Pfam Gelsolin repeat 260 332 IPR007123 -
Phco8g01819 954 Pfam Gelsolin repeat 28 111 IPR007123 -
Phco8g01819 954 Pfam Gelsolin repeat 149 211 IPR007123 -
Phco8g01819 954 Pfam Gelsolin repeat 632 706 IPR007123 -
Phco8g01819 954 Pfam Gelsolin repeat 405 476 IPR007123 -
Phco8g01819 954 MobiDBLite consensus disorder prediction 749 774 - -
Phco8g01819 954 FunFam Gelsolin 6 131 - -
Phco8g01819 954 Pfam Villin headpiece domain 919 954 IPR003128 GO:0003779|GO:0007010
Phco8g01819 954 Gene3D Severin 7 132 IPR029006 -
Phco8g01819 954 SMART VILL_6 617 713 IPR007122 GO:0051015
Phco8g01819 954 SMART VILL_6 137 229 IPR007122 GO:0051015
Phco8g01819 954 SMART VILL_6 386 483 IPR007122 GO:0051015
Phco8g01819 954 SMART VILL_6 513 600 IPR007122 GO:0051015
Phco8g01819 954 SMART VILL_6 249 339 IPR007122 GO:0051015
Phco8g01819 954 SMART VILL_6 19 117 IPR007122 GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01819 Phco-Chr8 19027690 19042446 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01819 8 19027690 19042446 Phco8g01819 8 19027690 19042446 ECH
Phco8g01819 8 19027690 19042446 Phco7g02505 7 43870532 43872962 PCT
Phco7g02800 7 47069186 47079776 Phco8g01819 8 19027690 19042446 PCT