Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01704 ATGGCCAAAAAATCACACTCACAGCTGCGAATCCAGAAAAACAATGCAACCAACATTGCCAATAATCTTAATGCAATCAACACTGTCCCCACCAAGGTCAAAAGAACCAGGAGAAGTGTCCCTAGAGACTCCCCTCCTCAACGAAGCTCCATATACCGAGGAGTCACTAGGCACCGATGGACTGGTCGATACGAAGCTCATTTGTGGGACAAACATTGCTGGAATGAAACACAGAACAAAAAAGGACGACAAGGTGCTTATGACAATGAAGTGGCAGCAGCACATGCTTATGATCTAGCCGCACTTAAATACTGGGGTCAAGATACCATTCTTAATTTTCCGTTATCAAACTATCTGAACGAACTGAAAGAAATGGGGGGTCAATCACGGGAGGAGTATATTGGATCACTGAGGAGGAAAAGCAGTGGTTTCTCTCGAGGGATTTCTAAATACAGAGGGGTTGCAAGACATCATCATAATGGAAGGTGGGAGGCTCGGATTGGCAAAGTTTTTGGTAATAAATATCTTTATCTCGGAACTTACGCTACCCAAGAAGAAGCTGCTACGGCCTATGACCTCGCAGCTATAGAATACCGTGGACTCAATGCTGTCACCAATTTCGATCTCAGCCGTTACATTAAGTGGCTTAAGCCTAATAACAACACCAACAATAATGACCAAATTAGCATTAATCTCAGTCACATGAATAAGAATTGCACTAGCAGCAACTTCACCCCAAACCCTGATCAAGAACAAGAGCAAGAAAGCTTCTTCCATAACCAGGATTCACTGAATACTATTGTAGAAGAAGCTACATTGGTGCCACATCAGCCTCGTCCATCAGGTGCCACGTCGGCATTGGAGCTTCTTCTTCAGTCATCCAAGTTCAAGGAAATGATGGAGATGACATCTGTGGCCAATATGTCCACACAGATGGAGTCTGAGTTGCCACAGTGCGCGTTTCCTGATCACATTCAAACTTACTTTGAGTATGAAGATTCCAACAGATATGAGGAAGTGGATGATCTCATGTTCAAGTTCAACGAGTTCAGCTCCATTGTGCCGTTTTACCACTGTGACGAGTTCGAGAGTTGA 1095 0.4402 MAKKSHSQLRIQKNNATNIANNLNAINTVPTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKHCWNETQNKKGRQGAYDNEVAAAHAYDLAALKYWGQDTILNFPLSNYLNELKEMGGQSREEYIGSLRRKSSGFSRGISKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDLAAIEYRGLNAVTNFDLSRYIKWLKPNNNTNNNDQISINLSHMNKNCTSSNFTPNPDQEQEQESFFHNQDSLNTIVEEATLVPHQPRPSGATSALELLLQSSKFKEMMEMTSVANMSTQMESELPQCAFPDHIQTYFEYEDSNRYEEVDDLMFKFNEFSSIVPFYHCDEFES 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01704 364 Gene3D AP2/ERF domain 149 210 IPR036955 GO:0003700|GO:0006355
Phco8g01704 364 Gene3D AP2/ERF domain 51 116 IPR036955 GO:0003700|GO:0006355
Phco8g01704 364 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 22 278 - -
Phco8g01704 364 Pfam AP2 domain 149 200 IPR001471 GO:0003700|GO:0006355
Phco8g01704 364 Pfam AP2 domain 51 106 IPR001471 GO:0003700|GO:0006355
Phco8g01704 364 CDD AP2 149 210 IPR001471 GO:0003700|GO:0006355
Phco8g01704 364 SMART rav1_2 150 214 IPR001471 GO:0003700|GO:0006355
Phco8g01704 364 SMART rav1_2 51 120 IPR001471 GO:0003700|GO:0006355
Phco8g01704 364 ProSiteProfiles AP2/ERF domain profile. 150 208 IPR001471 GO:0003700|GO:0006355
Phco8g01704 364 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Phco8g01704 364 PRINTS Ethylene responsive element binding protein signature 190 210 IPR001471 GO:0003700|GO:0006355
Phco8g01704 364 FunFam AP2-like ethylene-responsive transcription factor 50 116 - -
Phco8g01704 364 FunFam AP2-like ethylene-responsive transcription factor 149 210 - -
Phco8g01704 364 SUPERFAMILY DNA-binding domain 149 210 IPR016177 GO:0003677
Phco8g01704 364 ProSiteProfiles AP2/ERF domain profile. 51 114 IPR001471 GO:0003700|GO:0006355
Phco8g01704 364 SUPERFAMILY DNA-binding domain 50 116 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01704 Phco-Chr8 17560378 17562844 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Phco8g01704 AP2 4.9e-08 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01704 8 17560378 17562844 Phco8g01704 8 17560378 17562844 ECH
Phco8g01704 8 17560378 17562844 Phco7g02465 7 43346296 43351525 PCT