Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02465 ATGGGGAAGCACCAAAGACACAAAATCAATGCAAGCACTAACACTAACCTTAACGCAACCAACACTGTCCTCACCAAGGTCAAACGAACAAGAAGAAGTGTCCCTAGAGATTCCCCTCCTCAACGCAGCTCAATATACAGAGGAGTCACTAGGCACCGATGGACAGGCCGATATGAAGCTCATTTATGGGACAAGAATTGCTGGAATGAGTCACAGAACAAGAAAGGAAGACAAGGTGCTTATGATGATGAAGAAGCCGCAGCACACGCTTACGATCTAGCAGCATTGAAATACTGGGGTCAAGATACCATCCTTAATTTTCCATTATCAACCTACCAGAATGAAGTGAAAGAAATGGAGTGTCAATCACGGGAAGAGTACATTGGATCATTAAGAAGGAAAAGCAGCGGTTTTTCTCGTGGAGTGTCTAAATACAGAGGTGTTGCAAGACACCATCATAACGGAAGATGGGAGGCTCGGATTGGCAGGGTTTTTGGCAACAAATATCTTTACCTCGGAACTTACGCAACACAAGAAGAAGCTGCCACAGCATATGACATGGCAGCTATTGAATATCGAGGACTCAACGCTGTGACCAATTTCGACCTTAGCCGCTACATCAAGTGGCTTAAGCCCAACAACAACGATAACACTGTGAACTCTAATATTCTTCACGCTAACCCTAACCCTAATTCTGAGACCAACTCTACCCCAAGCTCTAATGAACAACAAGGGTTCAATTTTTTCCAGAGTCAAGAATCGACAATGGCTCAGCCTCGACCATCTGGCGCCACATCAGCCCTAGGACTTTTGCTTCAGTCGTCCAAGTTCAAGGAGATGATGGAGATGACTTCCGCCGCGGATTTGTCGACGGAAAGGTCGGAGTCTGAGTTGCTGCCGTGCACATTTCCCGATGACATTCAGACCTATTTCGAGTGTGAAGATTCCAATATATATGGAGAAGGGACTGATAACATGTTCAGCGAGCTCAACAGCTTTGTGCCCCATATGTTCCATTGTGATGAGTTTGAGTCTTGA 1038 0.4547 MGKHQRHKINASTNTNLNATNTVLTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGQDTILNFPLSTYQNEVKEMECQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNNDNTVNSNILHANPNPNSETNSTPSSNEQQGFNFFQSQESTMAQPRPSGATSALGLLLQSSKFKEMMEMTSAADLSTERSESELLPCTFPDDIQTYFECEDSNIYGEGTDNMFSELNSFVPHMFHCDEFES 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02465 345 Gene3D AP2/ERF domain 143 204 IPR036955 GO:0003700|GO:0006355
Phco7g02465 345 Gene3D AP2/ERF domain 45 110 IPR036955 GO:0003700|GO:0006355
Phco7g02465 345 CDD AP2 143 204 IPR001471 GO:0003700|GO:0006355
Phco7g02465 345 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 19 266 - -
Phco7g02465 345 SUPERFAMILY DNA-binding domain 44 110 IPR016177 GO:0003677
Phco7g02465 345 SMART rav1_2 144 208 IPR001471 GO:0003700|GO:0006355
Phco7g02465 345 SMART rav1_2 45 114 IPR001471 GO:0003700|GO:0006355
Phco7g02465 345 SUPERFAMILY DNA-binding domain 143 204 IPR016177 GO:0003677
Phco7g02465 345 MobiDBLite consensus disorder prediction 1 21 - -
Phco7g02465 345 ProSiteProfiles AP2/ERF domain profile. 144 202 IPR001471 GO:0003700|GO:0006355
Phco7g02465 345 MobiDBLite consensus disorder prediction 7 21 - -
Phco7g02465 345 FunFam AP2-like ethylene-responsive transcription factor 44 110 - -
Phco7g02465 345 Pfam AP2 domain 45 100 IPR001471 GO:0003700|GO:0006355
Phco7g02465 345 Pfam AP2 domain 143 194 IPR001471 GO:0003700|GO:0006355
Phco7g02465 345 ProSiteProfiles AP2/ERF domain profile. 45 108 IPR001471 GO:0003700|GO:0006355
Phco7g02465 345 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Phco7g02465 345 PRINTS Ethylene responsive element binding protein signature 184 204 IPR001471 GO:0003700|GO:0006355
Phco7g02465 345 MobiDBLite consensus disorder prediction 220 244 - -
Phco7g02465 345 FunFam AP2-like ethylene-responsive transcription factor 143 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02465 Phco-Chr7 43346296 43351525 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Phco7g02465 AP2 3.3e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01704 8 17560378 17562844 Phco7g02465 7 43346296 43351525 PCT