Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01519 ATGCAAATTAATGCCTCTTTACCAATCCATCCAATAACAACATTAATTCTCTTTTCTCTCAGCAACAATAATGTTGTCATAGGAACAAAATCTGAAACCTTTGCTGCTTGCCATACAGTGAGGCAGCCATTATGGCATGTTCATGCACACTGTCCGGATATCCAAGCACAACCTAGCTTCAAATTTTGTTTTGACTCCTTCCTTGCTCCTGTTTTTTATGCCTCTTGTCTCTGCTACTGCTACCCTCCTTCTGTTGTGTGGTGTGGTGTGGAAAGTGGGGATGGTGGTGGTGTTGAGGACTTGAGGACAGTTTTTATTATTATATGTGCCCATAAACATGAAGTGAACTATTTGGCAAGTGCAATGAAGGATCCAACGGAAGATCAACTGAAATCTAGGAGGGCTCTGCATAGATCAAAAGACCTTAGAAGAAGAGATAGAAGAAGAAGCCAATGCAAACAAGATAAATTACAAGAAACAGGACTTGACTCAGAATTGGTTTCCTCTGATTGCAAAAGTCTTGTGTTTCCTGCCAGACCTGGCTATGGCCAGCTGGGGATAAAGTGTCTGGTCAAAGCTAATCACTTCCTGGCAGATATATCAGTTTCTGACTTGAGCCATTACAATGTTAAAATAACACCTGAAATTACTTCTCGTAAAACAAGCAAAGCCATCATAACTGAGTTGGTGAGGCTTCACAGGAACACTGACTTGGGGATGAGGCTTCCTGTTTATGATGGAGGAAGAAATCTCTACACTGCTGGCTTGCTTCCTTTTGCATCCAAAGAGTTCTCCATAATATTGAGCGAGGATGATGAGGGTACTGGTAGTACCAGGGAAAGAGAATTTGAAGTGGTGATAAAGTTTGCAGCTCGTGTTAGCATGCATCAATTACGTGAGCTTCTGAGTGGGAAACAAGTGGACACCCCGCAAGAAGCCCTTACTGTCATTGACATTGTATTGAGGGAGCTTGCAGCTCAGAGCTTCGTGACAATTGGGAGGTTTCTCTATTCTCCGGATTTAAGAAAACCACAACAGTTAGGTGGTGGCCTGGAATCATGGCGTGGCTTCTACCAAAGTATAAGGCCTACTCAGATGGGATTGTCACTTAATATTGACATGTCATCAATGGCGTTTATTGAACCACTCCCTGTAATTGACTTTGTTGTTCAAATTTTGGGAAAAGATGTGCTCTCAAAGCCACTGTCAGATGCAGATCGTGTCAAGATTAAGAAAGCCTTAAGAGGTGTGAAAGTCGAAGTTACACACAGAGGAAGTTTTCGAAGGAAGTACAGAATTACAGGATTGACATCACAACCAACAAGGGAGCTCAATTTCCCTGTCGATGAGAAAATGAACATGAAATCAGTAGTTGATTACTTTCAAGAAATGTATGGATATACAATTATATATTCTCATCTACCCTGCCTTCAAGTAGGAAGCCAAAAGAAAGTGAACTATTTGCCTTTGGAGGCATGTAAGATAGTTGGGGGCCAGAGATATACAAAAGGGCTTAACGAAAAGCAGATAACTTCTCTGCTGAAGGTCTCATGCCAGAGACCACGTGAACAAGAGACAGACATTCTACAGGCAATTCAACAAAATAATTATGAGTATAATCCCTATGTAAAGGAGTTTGGTATCAGCATTGATAGCAAACTTGCATCAGTTGAAGCTCGGGTTCTTCCTGCTCCATGGTTGAAATATCACGACACTGGAAGAGAGAAAGAACACTTGCCACAAGTTGGTCAATGGAACATGATGAACAAGAAAGTTATAAACGGAAGCACTGTAAGATATTGGGCATGTATCAATTTCTCACGAAGTATCCAAGAAATTGCTCGCGGGTTTTGCCAACAGTTGGTTCAAATGTGCCAAATCTCAGGCATGGAATTTAGTCTAGACCCTGTGATTCCTATATATTCAGCAAGACCTGATATGGTAAAGAAAGCCTTGAAGTACGTACATTCTGCTGTACGAGATAAACTAGGTGGGAAAGAACTGGAGTTGCTGATTGCCATTCTTCCAGACAACAATGGCTCTCTGTATGGTGATCTCAAAAGAATCTGCGAAACAGATCTGGGGTTGATTTCTCAGTGCTGCCTTTCAAAACACGTATTCAAGATCAATAGACAGTATCTGGCAAATGTGGCCCTAAAGATCAATGTCAAGTTGGGAGGAAGGAACACAGTACTTTTGGATGCCCTAAGTTGGAGGATACCATTGGTTAGTGACATTCCAACAATCATTTTTGGAGCTGATGTAACTCATCCAGAATCTGGAGAGGACCCTTGTCCATCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCGGAAGTAACAAAGTATGCAGGATTAGTATGTGCTCAGCCTCATCGTGAGGAACTCATTCAAGATCTTTTTAAATGTTGGAAGGATCCTCATCATGGTATAGTTTATGGTGGCATGATCAGAGAGCTGTTACTCTCGTTTAAGAAGGCAACTGGACAAAAACCGTTGAGAATAATATTTTACAGGGATGGGGTAAGTGAAGGACAATTCTACCAGGTTTTGTTGTATGAGCTTGATGCCATCCGTAAGGCTTGTGCATCTTTGGAACCGAGTTACCAACCTCCGGTAACATTTGTTGTGGTTCAAAAACGGCATCACACCAGACTATTCTCAAACAATCACGACGACAGAAACAGCACTGATAAGAGTGGGAATATCTTACCTGGAACCGTGGTGGATTCTAAGATCTGTCATCCTACGGAATTCGATTTCTATTTATGCAGTCATGCGGGAATTCAGGGTACAAGTAGACCAGCTCATTATCATGTTCTGTGGGACGAGAACAATTTCACTGCTGATGAGATTCAATCTCTGACGAACAACTTGTGCTACACATATGCAAGATGCACACGATCTGTTTCTGTAGTGCCTCCTGCGTACTATGCTCACTTGGCAGCATACAGAGCCCGTTTCTACATGGAACCAGATGTTCATGAGATAGCTAAATCTCGAGGTGCTAGATCAAAAGATGAGTCAGTTCGGCCACTACCAGCTCTGAAAGAGAAGGTGAAGAATGTAATGTTTTACTGTTGA 3084 0.4215 MQINASLPIHPITTLILFSLSNNNVVIGTKSETFAACHTVRQPLWHVHAHCPDIQAQPSFKFCFDSFLAPVFYASCLCYCYPPSVVWCGVESGDGGGVEDLRTVFIIICAHKHEVNYLASAMKDPTEDQLKSRRALHRSKDLRRRDRRRSQCKQDKLQETGLDSELVSSDCKSLVFPARPGYGQLGIKCLVKANHFLADISVSDLSHYNVKITPEITSRKTSKAIITELVRLHRNTDLGMRLPVYDGGRNLYTAGLLPFASKEFSIILSEDDEGTGSTREREFEVVIKFAARVSMHQLRELLSGKQVDTPQEALTVIDIVLRELAAQSFVTIGRFLYSPDLRKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVVQILGKDVLSKPLSDADRVKIKKALRGVKVEVTHRGSFRRKYRITGLTSQPTRELNFPVDEKMNMKSVVDYFQEMYGYTIIYSHLPCLQVGSQKKVNYLPLEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQETDILQAIQQNNYEYNPYVKEFGISIDSKLASVEARVLPAPWLKYHDTGREKEHLPQVGQWNMMNKKVINGSTVRYWACINFSRSIQEIARGFCQQLVQMCQISGMEFSLDPVIPIYSARPDMVKKALKYVHSAVRDKLGGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLSKHVFKINRQYLANVALKINVKLGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDPCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPHHGIVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFSNNHDDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVHEIAKSRGARSKDESVRPLPALKEKVKNVMFYC 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01519 1027 Pfam PAZ domain 408 513 IPR003100 GO:0005515
Phco8g01519 1027 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 172 992 - -
Phco8g01519 1027 CDD PAZ_argonaute_like 382 496 - -
Phco8g01519 1027 SMART DUF1785_2 330 382 IPR014811 -
Phco8g01519 1027 ProSiteProfiles Piwi domain profile. 670 991 IPR003165 GO:0003676
Phco8g01519 1027 CDD Piwi_ago-like 541 990 IPR045246 -
Phco8g01519 1027 SUPERFAMILY PAZ domain 378 537 IPR036085 GO:0005515
Phco8g01519 1027 FunFam Protein argonaute-2 376 502 - -
Phco8g01519 1027 ProSiteProfiles PAZ domain profile. 387 497 IPR003100 GO:0005515
Phco8g01519 1027 FunFam protein argonaute 10-like 739 1027 - -
Phco8g01519 1027 Gene3D - 561 733 - -
Phco8g01519 1027 FunFam Argonaute 10 561 733 - -
Phco8g01519 1027 Pfam Mid domain of argonaute 580 656 IPR032473 -
Phco8g01519 1027 Pfam Argonaute linker 1 domain 331 380 IPR014811 -
Phco8g01519 1027 MobiDBLite consensus disorder prediction 136 150 - -
Phco8g01519 1027 Pfam N-terminal domain of argonaute 188 321 IPR032474 -
Phco8g01519 1027 Gene3D paz domain 377 501 - -
Phco8g01519 1027 SUPERFAMILY Ribonuclease H-like 661 992 IPR012337 -
Phco8g01519 1027 SMART Piwi_a_2 670 991 IPR003165 GO:0003676
Phco8g01519 1027 Gene3D - 739 1027 IPR036397 GO:0003676
Phco8g01519 1027 SMART PAZ_2_a_3 387 519 IPR003100 GO:0005515
Phco8g01519 1027 MobiDBLite consensus disorder prediction 129 154 - -
Phco8g01519 1027 Pfam Argonaute linker 2 domain 525 569 IPR032472 -
Phco8g01519 1027 Pfam Piwi domain 671 990 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01519 Phco-Chr8 15651446 15659364 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01519 8 15651446 15659364 Phco8g01519 8 15651446 15659364 ECH
Phco8g01519 8 15651446 15659364 Phco7g02380 7 41633611 41640291 PCT