Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01446 ATGTCACGTGGTCGCATTGCCGTCCACCGCTTGCGCTATACCTACGCCGCATCATCGTCAATCACCTCATCCTCATCTGCAGTTACACGCTTTCAGTTCCAATGTCCCCAACAATATCTCACGCGCGCATCCCTCCCCTTCCACTTCCACTCTCGTTATTCTTCGTCTGTCCCCAAACAAGCCTTACACGGTGGCGTCGAGAATTATCCGAGTGGAGACTTTGATTTCAAGCCCCTCACTGGCTGGAAAAACTTCATCGTCAAGCTCAAGATGCTAACGGCCTTACCCTGGCACCGGCTCCGATATGACACCGTTTTGACAATCAAGTTGCGCGGCCAGATATCGGATCAGCTCAAGAGTAGGTTCTCTCGGGGATTATCTCTGCCTCAAATCTGTGATAACTTCTTGAAGGCAGCTTATGATCCTCGAATTTCCGGTATCTATCTCCACATTGATACTTTAAATTGCGGCTGGGCGAAGGTTGAAGAAATTCGAAGGCATATCTTCAATTTCAGAAAATCAGGAAAATTAATTGTGGCTTATGTCCCTTCATGTCGAGAAAAAGAATATTATATTGCAAGTGCGTGTGAAGAAATATATGCCCCTCCAAGTGCTTATTTTTCTTTGTTTGGACTGACTGTTCAAGCTCCATTCTTCAGAGGTGTTTTGGAGAATCTTGGAATTGAACCAGAAGTGGAAAGGATTGGCAAGTACAAAAGTGTAGGAGATCAACTTACCCGTAGAACCATGTCTGAAGATCATCATGAGATGCTTACTGCATTGCTTGACAATATCTATACACATTGGCTGGACAATGTCTCTGCTGCTAGAGGAAAGAAAAGAGAAGATATTGAGAACTTCATAAATAAAGGTGTTTATCAAGTAGAGACACTTAAAGAAGAGGGCTTCATATCAGACATAATCTATGATGACGAGGTTATCACTCGGTTGAAGGAGAGACTTCAAGTAAAAACAAAGAAAAATCTGCCTATGGTTGATTACAGAAAATACTCTGGAGTTAGGAAATCAACTCTTGGGCTATCAGATGGTAAAGACTTAATAGCCGTCATCCGAGCTTCAGGGAGTATTCGTCGTATTGATAGTCCACTAGGTGCCCGTAGCTCAGGTATCATTGGAGAGAAGTTAATTGAGAAGATACGCAGTATACGAGAGTCAAATAAATACAAGGCTGCAATTATCCGAATTGACAGTCCAGGAGGGGATGCCCTTGCTTCTGATTTGATGTGGAGAGAAATCAGGCTTCTGGCTGCCTCAAAACCAGTCATTGCTTCAATGTCTGATGTTGCAGCAAGTGGAGGGTACTACATGGCAATGGGAGCAGGAGTTATTGTTGCAGAAAATCTTACCTTAACTGGTTCTATTGGAGTGGTCACAGGAAAGCTTAACCTTGGGAAACTCTATGAGAAGATTGGCTTCAACAAAGAAATTATATCAAGGGGTAGATATGCTGAGCTGCGGGCAGCTGAACAGCGTTCGTTTAGACCAGATGAAGCAGAGCTATTTTCCCAGTCTGCGCAGCATGCTTATAAACAATTTCGAGATAAAGCCGCCTTTTCTCGATCTATGACTGTAGACAAGATGGAAGAGGTTGCGCAGGGGAGGGTTTGGACTGGCAAGGATGCAGCTTCTCATGGTTTGATTGATGCTATTGGTGGACTTTCTCGAGCTGTTGCCATAGCAAAATTGAAGGCCGGTATACCTCAAGATAGACAGGTTACTGTTGTGGAGCTTTCAAGACCCAGCCCTTCTCTACCCGAGATTTTGAGTGGTCTAGGTAATTCTCTCGTTGGAGTAGACAGAACTTTAAACGAATTACTAGAGGACTTGACATTTTCTCATGGAGTCCAAGCACGGATGGACGGAATCATGTTTGAGAAATTGGAAGGATATTCATACGCCAACCCTATTTTGGCATTGATAAAAGATTATCTTAGTTCCCTTTAG 1965 0.4366 MSRGRIAVHRLRYTYAASSSITSSSSAVTRFQFQCPQQYLTRASLPFHFHSRYSSSVPKQALHGGVENYPSGDFDFKPLTGWKNFIVKLKMLTALPWHRLRYDTVLTIKLRGQISDQLKSRFSRGLSLPQICDNFLKAAYDPRISGIYLHIDTLNCGWAKVEEIRRHIFNFRKSGKLIVAYVPSCREKEYYIASACEEIYAPPSAYFSLFGLTVQAPFFRGVLENLGIEPEVERIGKYKSVGDQLTRRTMSEDHHEMLTALLDNIYTHWLDNVSAARGKKREDIENFINKGVYQVETLKEEGFISDIIYDDEVITRLKERLQVKTKKNLPMVDYRKYSGVRKSTLGLSDGKDLIAVIRASGSIRRIDSPLGARSSGIIGEKLIEKIRSIRESNKYKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGAGVIVAENLTLTGSIGVVTGKLNLGKLYEKIGFNKEIISRGRYAELRAAEQRSFRPDEAELFSQSAQHAYKQFRDKAAFSRSMTVDKMEEVAQGRVWTGKDAASHGLIDAIGGLSRAVAIAKLKAGIPQDRQVTVVELSRPSPSLPEILSGLGNSLVGVDRTLNELLEDLTFSHGVQARMDGIMFEKLEGYSYANPILALIKDYLSSL 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01446 654 Gene3D - 103 339 - -
Phco8g01446 654 SUPERFAMILY ClpP/crotonase 96 312 IPR029045 -
Phco8g01446 654 CDD S49_SppA_67K_type 106 319 IPR047217 -
Phco8g01446 654 NCBIfam signal peptide peptidase SppA 354 568 IPR004635 GO:0006508|GO:0008233
Phco8g01446 654 Gene3D - 499 622 - -
Phco8g01446 654 Gene3D - 348 498 - -
Phco8g01446 654 Pfam Peptidase family S49 171 323 IPR002142 GO:0006508|GO:0008233
Phco8g01446 654 Pfam Peptidase family S49 422 572 IPR002142 GO:0006508|GO:0008233
Phco8g01446 654 CDD S49_Sppa_N_C 354 568 IPR047272 -
Phco8g01446 654 PIRSF Protease_4_SppA 46 654 IPR004634 GO:0006465|GO:0008233|GO:0016020
Phco8g01446 654 PANTHER PROTEASE 4 67 653 - -
Phco8g01446 654 SUPERFAMILY ClpP/crotonase 355 559 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01446 Phco-Chr8 14938713 14947478 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01446 8 14938713 14947478 Phco8g01446 8 14938713 14947478 ECH
Phco8g01446 8 14938713 14947478 Phco7g02436 7 42509862 42524651 PCT