Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01291 ATGGACGACGGCGATCCTTCCCTGTCCGATAAAGAGGAGGAGAACGATGAGGAAGACGTGGCGGACATTCTGTTGCGAATTCCGATCGTCGATGCTCCCATACTCATCTTTGTTTGCTTCCACAAGGCTTTTCGCTCTGAACTCGATCACCTTCGTCGCTTGGCGGAAACGGCGTCGTTGGAGGACGAGCCTCGCCGTTGCCGGCAAATGATCCTTCAGCTTCAACGCAGGTTCCAGTTTCTGAAACTAGCACATAAGTATCACTGTGCTGCGGAAGACGAGGTTATCTTTCATGCACTGGATGCTCATGTGAAAAATGTCGTTTGTACATATTCGCTTGAACATAAAAGCACCTCAGACCTTTTTGGATCTGTTTTTCACTCCTTGGAAGAGCTGATGGTTCCTAAAGAGAATATTTCGAAGCTGTTCCAAGAACTTGTGTACTGTATTGGTATCTTGCAAACCTACATCTACGAACATATGCTGAAAGAAGAAAAGCAGGTTTTCCCCCTATTGATGCAGAAATTATGTACTGAAGAACAGGCCTCACTTGTGTGGCTATTCATATGTAGTGTTCCTATAATGTTTCTGGAGGAACTTTTTCCATGGATGGTATCCTTCCTTTCTGCAAGTAAGCAGTCAGAAGTTACCCAGTGTATAAATGAAATTGCACCAATGGAAACAGCACTGCAAGAGGTTTTGGTTTCTTGGCTTAGAAGCAACAAACAAACCTTTACTGAGACCTGTTTTCAGAGTGGAGAATTTCAAGGTGTTGATGGTTTCCTGCATATAGAAAGATCATATAGGAAAACCGAAGAAGTTTCAAGTCTAATGGAAGTGAATGGCCAAGAAATAGAAGATGGGGTCTACCAGGTTAATGTCCTTCATCTTTGGCATAATGCCATCAAGAAAGATTTGAAAGAAATTCTGAAAGAACTTTACCTACTAAGAAAATCCAGCTGTTTTCAGAATTTAGACTCAATACTTATCCAAGTGAAATTCTTTGCCGATGTCCTCATCTTCTACAGCAATGCTCAGAAGAAATTCTTTCATCCTGTACTGAGTAAATATGCTAATGGCTGGTTGTCCAAGTCTATTGAAAAATTTCTAGGTGAAAGTAACATTGAAGATATACAACAGTTGCTATTCTGCAACTCAGAAAGTGGAACATCTTTGAGCAAGTTCGTAGAGAAGCTTTGCCAAAAACTGGAATCATTTGTATCAGGAGTCAACAAACAATTTGCTTTTCAAGAAAATGAGGTATTTCCTATCTTTAGAAAGAACTGCAGAAATGGAATGCAAGAGGGACTTCTAAGCTTGAGCCTACATATGATGCCTCTGGGGTTACTAAAATGTGTTATAACTTGGTTTTCAGTTAGATTGTCTGAAAAAGAGTCCAGGTCCATTCTCTATTGCATAAAGAAAGGAAACAATTCTGTCTGTAAAGCTTTTTCATCATTATTACATGAGTGGTTCCGCATTGGCTATTCAGGTAAAGCCTCTATTGAAAAATTCAGACTAGACTTGCAACACATGTTCAAAAGAAGATGCTTTATTTCACCTGAACAAAATAAGGAAGCTCATGGATTTTCTTTCATAAATTCTGAGAAGCAGTCTCATAAAGTCTCTGACCAAAATTCTTTGTCCTGTTCCTCCTCATCTGGATCCAGTAGTGTAAACAAGTATGAGATACCATACTCTACCGGAATTAATCTGCACATATTTTTTCCTGCCACAGTTGGGAAGTTACATCAGTATCCAGCATTACATGCAGCAGAACGATCTTCTATTTCCTTTCTTGATGATCCGAAACCAATTGACCTAATATTTTTCTTTCACAAAGCTATCAAGAAAGATCTGGAGTTCCTAGTTCTTGGCTCAGCCGAGCTAGAAAAAAATGATAAGTTGCTTACGGATTTCCAGAAACGATTCCATCTCATATATTTTCTTCATCAGATCCATAGTGATGCAGAGGATGAGATAGTTTTTCCAGCCTTGGAGGCTAGAGGAAAACTAAAAAACATTAGCCATGCTTACACTTTTGATCACAACCATGAAGTTGAACACTTCAATGAAATATCTCACATCCTTGATAAGATGTCTAGATTACATCTTTCAATTTCTACAATTGATTCAAATATAAAGGAGATGGGACTGCTAAGGTATCAGCATTTATGCAGGAAGCTGCAAGAAATGTGCAAATCAATGTATACATCACTTTCCAATCATATAGACCGTGAGGAAATAGAAATTTGGCCTATAATTAGAAAATTCTTCACAAACCAGGAGCAAGGGAAGATCATGGGATGCATGCTTGGAAGAATAAAGGCAGAAATATTACAAGATATGATACCTTGGCTAATGGCATCTTTGACACAGGAAGAACAACATGTTTCAATGTTCTTATGGTCCATGGCTACTAAAAATACAATGTTTGCTGAATGGTTAGGTGAATGGTGGGATGGGTACAGTTTAGCTAAGGTAACAGAGGGCTCAAACGATGCCCCTCTTCAGCCTGTTGAGCCACTGGAGATTATATCCAAATATTTATCTGAAGAAATTCTAAATGAATTACAAGAATCATCATCTGCCAACAAAAGCATAATTTTTTTGGAGAAGGATCGTATTGGTGATAATGTTGAGCTGTCTAACTACAACCACAATGATAAATTTAAGGTTCATAATGCTGAAAAAAATAATAATCAATGTTCAAAACGCACAAATCAATTTCACGATGATGACAAACATGTTTGCAATGAGGTAGCAGATATCATAAATCCGGTAGTCAATGAAGGTAAGTCGTCTAAACTTTGTGACGAGTCTGGGCGTTATGAACGACTTTTGAAATTGAGCCAAGATGATTTGGAGACGGTGATAAGAAGGGTGTCTCGTGACTCTTGCTTAGATCCTCAGAAAAGGTCGTACATAATACAGAACCTACTGATGAGCCGTTGGATTATTAAACAGCAGATCTCTTCTACTGAAGTCAATGTAAAAAATGATAATCTGGAATTTTCTGGAAAGCATCCATCATACAGGGATCCTCTCAAACTAATCTACGGCTGTAAACACTACAAGAGGAATTGTAAGCTTTTTGCTCCATGTTGCAACCAACTTCATACCTGCATACACTGTCATAACGACGAATCAGATCATTCAATTGATAGAAAATCTATTACAAAGATGATGTGTATGAAGTGCTTGATGATTCAACCAATCAGTGCCACATGCTCAACAATTTCTTGCAATTTATCGATGGCAAAATATTACTGCAGAATCTGCAAATTATTCGATGATGAAAGGGAAATTTACCATTGTCCTTACTGTAACCTGTGCCGAGTTGGAAAGGGTTTGGGTGTAGACTACTTTCACTGTATGAACTGCAATGCGTGTATGTCCCGTTCTCTTATGACGCATACATGCAGGGAGAAACATTTAGAGGACAACTGTCCAATTTGTCATGAATATATCTTCACATCCTGCTCTCCTGTAAAAGCCCTCCCATGTGGTCACGTGATGCACTCAACATGTTTTCAGGAATATACAAGATTTAATTACATCTGTCCCATATGTAGCAAGTCACTCGGAGACATGCAGGTATATTTTAGGATGTTAGATGCGTTATTGGCTGAAGAGAGTATTCCCGATGAGATGTCAGGTCAAACTCAGGTTATATTATGTAATGACTGTGAAAAGAAAGGAAAGACCCCCTTCCACTGGCTCTACCACAAATGCCCTAGCTGTGGTTCCTACAATACTAGAGTTCTGTGA 3771 0.3888 MDDGDPSLSDKEEENDEEDVADILLRIPIVDAPILIFVCFHKAFRSELDHLRRLAETASLEDEPRRCRQMILQLQRRFQFLKLAHKYHCAAEDEVIFHALDAHVKNVVCTYSLEHKSTSDLFGSVFHSLEELMVPKENISKLFQELVYCIGILQTYIYEHMLKEEKQVFPLLMQKLCTEEQASLVWLFICSVPIMFLEELFPWMVSFLSASKQSEVTQCINEIAPMETALQEVLVSWLRSNKQTFTETCFQSGEFQGVDGFLHIERSYRKTEEVSSLMEVNGQEIEDGVYQVNVLHLWHNAIKKDLKEILKELYLLRKSSCFQNLDSILIQVKFFADVLIFYSNAQKKFFHPVLSKYANGWLSKSIEKFLGESNIEDIQQLLFCNSESGTSLSKFVEKLCQKLESFVSGVNKQFAFQENEVFPIFRKNCRNGMQEGLLSLSLHMMPLGLLKCVITWFSVRLSEKESRSILYCIKKGNNSVCKAFSSLLHEWFRIGYSGKASIEKFRLDLQHMFKRRCFISPEQNKEAHGFSFINSEKQSHKVSDQNSLSCSSSSGSSSVNKYEIPYSTGINLHIFFPATVGKLHQYPALHAAERSSISFLDDPKPIDLIFFFHKAIKKDLEFLVLGSAELEKNDKLLTDFQKRFHLIYFLHQIHSDAEDEIVFPALEARGKLKNISHAYTFDHNHEVEHFNEISHILDKMSRLHLSISTIDSNIKEMGLLRYQHLCRKLQEMCKSMYTSLSNHIDREEIEIWPIIRKFFTNQEQGKIMGCMLGRIKAEILQDMIPWLMASLTQEEQHVSMFLWSMATKNTMFAEWLGEWWDGYSLAKVTEGSNDAPLQPVEPLEIISKYLSEEILNELQESSSANKSIIFLEKDRIGDNVELSNYNHNDKFKVHNAEKNNNQCSKRTNQFHDDDKHVCNEVADIINPVVNEGKSSKLCDESGRYERLLKLSQDDLETVIRRVSRDSCLDPQKRSYIIQNLLMSRWIIKQQISSTEVNVKNDNLEFSGKHPSYRDPLKLIYGCKHYKRNCKLFAPCCNQLHTCIHCHNDESDHSIDRKSITKMMCMKCLMIQPISATCSTISCNLSMAKYYCRICKLFDDEREIYHCPYCNLCRVGKGLGVDYFHCMNCNACMSRSLMTHTCREKHLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTRFNYICPICSKSLGDMQVYFRMLDALLAEESIPDEMSGQTQVILCNDCEKKGKTPFHWLYHKCPSCGSYNTRVL 1256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01291 1256 FunFam Zinc finger protein-related isoform 1 1145 1194 - -
Phco8g01291 1256 CDD Hr-like 36 170 - -
Phco8g01291 1256 Pfam Zinc-ribbon 1197 1254 IPR039512 -
Phco8g01291 1256 Gene3D - 1221 1256 - -
Phco8g01291 1256 CDD Hr-like 607 753 - -
Phco8g01291 1256 ProSiteProfiles Zinc finger RING-type profile. 1150 1192 IPR001841 -
Phco8g01291 1256 SUPERFAMILY Zinc hairpin stack 1087 1142 IPR037275 -
Phco8g01291 1256 CDD RING-H2_Pirh2-like 1149 1192 - -
Phco8g01291 1256 SMART ring_2 1150 1191 IPR001841 -
Phco8g01291 1256 Pfam CHY zinc finger 1022 1096 IPR008913 GO:0008270
Phco8g01291 1256 ProSiteProfiles Zinc finger CHY-type profile. 1015 1084 IPR008913 GO:0008270
Phco8g01291 1256 Pfam Hemerythrin HHE cation binding domain 41 172 IPR012312 -
Phco8g01291 1256 Pfam Hemerythrin HHE cation binding domain 605 754 IPR012312 -
Phco8g01291 1256 Gene3D nmb1532 protein domain like 32 189 - -
Phco8g01291 1256 Gene3D nmb1532 protein domain like 601 773 - -
Phco8g01291 1256 Gene3D nmb1532 protein domain like 289 439 - -
Phco8g01291 1256 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 650 772 - -
Phco8g01291 1256 SUPERFAMILY RING/U-box 1139 1196 - -
Phco8g01291 1256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1143 1194 IPR013083 -
Phco8g01291 1256 ProSiteProfiles Zinc finger CTCHY-type profile. 1086 1149 IPR017921 -
Phco8g01291 1256 Pfam Ring finger domain 1148 1191 IPR001841 -
Phco8g01291 1256 SUPERFAMILY CHY zinc finger-like 1013 1078 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01291 Phco-Chr8 13517921 13528414 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01291 8 13517921 13528414 Phco8g01291 8 13517921 13528414 ECH
Phco4g01608 4 15498551 15501903 Phco8g01291 8 13517921 13528414 PCT