Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01264 ATGGAACGCACTGCGTCCTTCAACCATACCAATAATACTCTCTCTTCTCAACCAAGTCTCGCTTCAGTTCCCTCCCTCAACTCACCCTCACACCTCTTCAACGCTTCCACCACCTCTCACACGTGCCTCGCCACTATCAAACCCCACACCTCCTCCTACACCTCCTCCCTCACCCTCGCCGGCAAGTTCCTCTACGCAGGCTCCTCCAACAGAGAAATCAGATCCTGGAACTACACCATTTTCCTCTCCGAACACCCACAAAACACCGACATCTTAACGGCGGGAAAAGGTGCTGTGAAATCCATAGTGGTCCACTCCGACAAGCTCTTCACCGCACACCAAGACCATAAAATCCGCGTCTGGAGAATCACCACCCACGACCACGACCACCAGAGGTTCACACGTGTGGCCACTCTCCCGACGCTCGGCGACCGCGTCACCAAAATCTTGCTGCCCAAGAATCACGTTCAGATTCGGCGGCACAAGAAGTGCACCTGGGTTCACCACGTGGATACCGTCTCCTCCCTGGCCTTGTCCCACGACGGAACGCTGTTGTACTCCGTTTCTTGGGACCGCACGATCAAGGTTTGGCGGACGAAAGACTTCGCGTGCTTGGAGTCCATACGCAACGCGCACGACGACGCCATAAACGCTGTGGCAGTTTCTAACGACGGGCACGTGTACACGGGATCCACAGACAAGAGAATCAGGGTTTGGAGAAAAAAGGAAGGGGAGAAGAAACACTCGGTGGTGGAGACGTTGGAGAAACACAAGTCAGGGATTAACGCTTTGGCTCTTAGCAGTGACGGGTGCGTGTTGTACTCTGGTGCATGTGATAGATCGATACTGGTTTGGGAGCAGGGAGAGAATGGTAAATTGGTGGTGGTTGGTGCTTTGAGGGGGCACACTAAATCCATTTTGTGCTTGGCTGTGGTTTCGGATTTGTTGTGCAGTGGTTCTGAGGATAAAACGGTGCGTATTTGGAGAGGCCTTCAGAAGGACTATTCCTGCTTAGCTGTTTTGGAAGGACATAGGAGCCCAATTAAGAGCCTAACTGCAACGCTTCATCACACTCATCTTCCTTCCCAACTATCTCTTCTTCTCTACAGTGGCAGTTTGGACAGTGATGTCAAAGTTTGGCAGCTTTTTCTTCCTCTTCTTTCAACCTAA 1170 0.5205 MERTASFNHTNNTLSSQPSLASVPSLNSPSHLFNASTTSHTCLATIKPHTSSYTSSLTLAGKFLYAGSSNREIRSWNYTIFLSEHPQNTDILTAGKGAVKSIVVHSDKLFTAHQDHKIRVWRITTHDHDHQRFTRVATLPTLGDRVTKILLPKNHVQIRRHKKCTWVHHVDTVSSLALSHDGTLLYSVSWDRTIKVWRTKDFACLESIRNAHDDAINAVAVSNDGHVYTGSTDKRIRVWRKKEGEKKHSVVETLEKHKSGINALALSSDGCVLYSGACDRSILVWEQGENGKLVVVGALRGHTKSILCLAVVSDLLCSGSEDKTVRIWRGLQKDYSCLAVLEGHRSPIKSLTATLHHTHLPSQLSLLLYSGSLDSDVKVWQLFLPLLST 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01264 389 CDD WD40 42 351 - -
Phco8g01264 389 PRINTS G protein beta WD-40 repeat signature 368 382 IPR020472 -
Phco8g01264 389 PRINTS G protein beta WD-40 repeat signature 185 199 IPR020472 -
Phco8g01264 389 PRINTS G protein beta WD-40 repeat signature 316 330 IPR020472 -
Phco8g01264 389 MobiDBLite consensus disorder prediction 1 22 - -
Phco8g01264 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 328 IPR001680 GO:0005515
Phco8g01264 389 Pfam WD domain, G-beta repeat 297 328 IPR001680 GO:0005515
Phco8g01264 389 Pfam WD domain, G-beta repeat 205 239 IPR001680 GO:0005515
Phco8g01264 389 Pfam WD domain, G-beta repeat 167 197 IPR001680 GO:0005515
Phco8g01264 389 Pfam WD domain, G-beta repeat 252 285 IPR001680 GO:0005515
Phco8g01264 389 Pfam WD domain, G-beta repeat 336 380 IPR001680 GO:0005515
Phco8g01264 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 209 239 - -
Phco8g01264 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 166 197 - -
Phco8g01264 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 254 286 - -
Phco8g01264 389 Gene3D - 291 383 IPR015943 GO:0005515
Phco8g01264 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 207 IPR001680 GO:0005515
Phco8g01264 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 299 328 - -
Phco8g01264 389 SUPERFAMILY WD40 repeat-like 39 382 IPR036322 GO:0005515
Phco8g01264 389 Gene3D - 20 153 IPR015943 GO:0005515
Phco8g01264 389 SMART WD40_4 201 240 IPR001680 GO:0005515
Phco8g01264 389 SMART WD40_4 39 77 IPR001680 GO:0005515
Phco8g01264 389 SMART WD40_4 292 329 IPR001680 GO:0005515
Phco8g01264 389 SMART WD40_4 159 198 IPR001680 GO:0005515
Phco8g01264 389 SMART WD40_4 247 286 IPR001680 GO:0005515
Phco8g01264 389 SMART WD40_4 334 381 IPR001680 GO:0005515
Phco8g01264 389 SMART WD40_4 85 122 IPR001680 GO:0005515
Phco8g01264 389 Gene3D - 154 290 IPR015943 GO:0005515
Phco8g01264 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 249 IPR001680 GO:0005515
Phco8g01264 389 FunFam BnaA09g28200D protein 156 244 - -
Phco8g01264 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 254 286 IPR001680 GO:0005515
Phco8g01264 389 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 8 382 IPR045182 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01264 Phco-Chr8 13230394 13231563 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01264 8 13230394 13231563 Phco7g02176 7 38589301 38590497 ECH
Phco8g01264 8 13230394 13231563 Phco8g01264 8 13230394 13231563 ECH
Phco8g01264 8 13230394 13231563 Phco7g02176 7 38589301 38590497 PCT