Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02176 ATGGAATACCCTCCATCATATAGCGTCTCTTCCTCTTCTAACTCCTCCAACCATCAACAAGGCTCAACATCTCTCTCTTCACAACGCAGCCTTATCTCAGTTCCATCCCTCAACTCTTCCACCACCACCACTACCACCTTCCACCACTGCCTCACAACCCTCAAGGGCCACACCTCCTACATCTCCTCCTTAGCCCTCTCCGGCAAATTCCTTTACACGGGCTCCTCCGACAGAGAAATCAGGTCCTGGAACCGCACCCCTCTCATCTCTCACCCTCAAAGCACCGTTCTCGCCGGAAACGGCGCCGTTAAGTCCTTAATAATCCAATCCAACAAACTCTTCAGCGCCCACCAAGACCACAAAATCCGCGTCTGGAAAATCAGCAGCAGCAACAAAAGTAACCACGAACATGATGACGACCATGAAAAATACACGCACGTGGCCACACTCCCCACCCTTGGAGACCGTGCCTCGAAGGTTCTGATCCCGAAGAACCATGTCCAAATCCGAAGGCACAAGAAGTGCACGTGGGTTCATCACGTGGACACGGTGTCCGCGCTCGCACTGTCGAAAGACGGGACCTTGCTGTACTCCGTTTCGTGGGACAGAAGCATCAAAATCTGGAGAACCAAGGACTTCGCGTGTCTGGAGTCTCTCACCAACGCACACGACGACGCCATAAACGCCATCGCGGTTTCTTACGATGGACTTGTGTTCACGGGATCAGCAGACAAGAGAATCAAGATGTGGAGGAAGGAAGAAGGGGAAAAAAGACACACGCTGGTGGAGACTTTGGAGAAGCACAACTCTGGGGTGAATGCGTTGGCTCTGAGCAATGATGAGAGCAATTTGTATTCGGGTGCATGCGATAGATCTGTTTTAGTTTGGGAGAAAAAGGGAGGGAGAATGGGGTTGGTGGGTGCGTTGAGGGGTCACACAAAATCCATTTTGTGTTTGGCTGTTGTGGCTGATTTGGTCTGTAGCGGCTCTGCTGATAAAACGATAAGAATTTGGCGAGGGCTTCATGCACAATATTCTTGTTTAGCTGTTTTAGAAGGACACGGTGGTTCGATCAAGTGCTTAACTGCAGTGCTTGACCACTGTAACCCATCACACTCCCACCCATCTTTTCTACTCTACAGTGGCGCTTTGGACTGCGACATTAAGGTTTGGCAGATTTCAGTTCCTTCTATCTGA 1197 0.5054 MEYPPSYSVSSSSNSSNHQQGSTSLSSQRSLISVPSLNSSTTTTTTFHHCLTTLKGHTSYISSLALSGKFLYTGSSDREIRSWNRTPLISHPQSTVLAGNGAVKSLIIQSNKLFSAHQDHKIRVWKISSSNKSNHEHDDDHEKYTHVATLPTLGDRASKVLIPKNHVQIRRHKKCTWVHHVDTVSALALSKDGTLLYSVSWDRSIKIWRTKDFACLESLTNAHDDAINAIAVSYDGLVFTGSADKRIKMWRKEEGEKRHTLVETLEKHNSGVNALALSNDESNLYSGACDRSVLVWEKKGGRMGLVGALRGHTKSILCLAVVADLVCSGSADKTIRIWRGLHAQYSCLAVLEGHGGSIKCLTAVLDHCNPSHSHPSFLLYSGALDCDIKVWQISVPSI 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02176 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 309 338 - -
Phco7g02176 398 CDD WD40 54 392 - -
Phco7g02176 398 SMART WD40_4 170 209 IPR001680 GO:0005515
Phco7g02176 398 SMART WD40_4 212 251 IPR001680 GO:0005515
Phco7g02176 398 SMART WD40_4 258 297 IPR001680 GO:0005515
Phco7g02176 398 SMART WD40_4 89 126 IPR001680 GO:0005515
Phco7g02176 398 SMART WD40_4 302 339 IPR001680 GO:0005515
Phco7g02176 398 SMART WD40_4 47 84 IPR001680 GO:0005515
Phco7g02176 398 SMART WD40_4 344 392 IPR001680 GO:0005515
Phco7g02176 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 250 - -
Phco7g02176 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 297 - -
Phco7g02176 398 Gene3D - 9 150 IPR015943 GO:0005515
Phco7g02176 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 54 84 IPR001680 GO:0005515
Phco7g02176 398 Pfam WD domain, G-beta repeat 262 296 IPR001680 GO:0005515
Phco7g02176 398 Pfam WD domain, G-beta repeat 215 250 IPR001680 GO:0005515
Phco7g02176 398 Pfam WD domain, G-beta repeat 178 208 IPR001680 GO:0005515
Phco7g02176 398 Pfam WD domain, G-beta repeat 346 391 IPR001680 GO:0005515
Phco7g02176 398 Pfam WD domain, G-beta repeat 50 84 IPR001680 GO:0005515
Phco7g02176 398 Pfam WD domain, G-beta repeat 306 338 IPR001680 GO:0005515
Phco7g02176 398 PRINTS G protein beta WD-40 repeat signature 326 340 IPR020472 -
Phco7g02176 398 PRINTS G protein beta WD-40 repeat signature 113 127 IPR020472 -
Phco7g02176 398 PRINTS G protein beta WD-40 repeat signature 379 393 IPR020472 -
Phco7g02176 398 FunFam BnaA09g28200D protein 167 255 - -
Phco7g02176 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 297 IPR001680 GO:0005515
Phco7g02176 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 218 IPR001680 GO:0005515
Phco7g02176 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 177 208 - -
Phco7g02176 398 SUPERFAMILY WD40 repeat-like 49 394 IPR036322 GO:0005515
Phco7g02176 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 309 338 IPR001680 GO:0005515
Phco7g02176 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 54 84 - -
Phco7g02176 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 260 IPR001680 GO:0005515
Phco7g02176 398 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 11 395 IPR045182 -
Phco7g02176 398 Gene3D - 166 396 IPR015943 GO:0005515
Phco7g02176 398 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02176 Phco-Chr7 38589301 38590497 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01264 8 13230394 13231563 Phco7g02176 7 38589301 38590497 ECH
Phco7g02176 7 38589301 38590497 Phco7g02176 7 38589301 38590497 ECH
Phco8g01264 8 13230394 13231563 Phco7g02176 7 38589301 38590497 PCT