Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01197 ATGGGAAAGAAAACGAAGCAAATAGGAGAAATAAGGGAGGATAGTAAAATGGGAGATAGCAGCCCCAAAGCATATGATAATGATACTATGGTGTTTATATCCATGTCTCACGAATTGAAGAATGAGGGGAACAAGCTGTTCCAAAAGAGGGATCTAGAAGGAGCTATACTAAAATATGAGAAAGCCCTCAAGTTACTTCCGAGAAATCATATTGATGTGTCCTATCTGCGGAGCAACATGGCTGCATGTTATATGCAGAAGGGGGTCAGTGAGTTCCCAAGGGCTATTCATGAGTGTGATTTGGCTCTTGAAGTGACACCCAAATATGGTAAAGCACTGTTGAAGAGAGCAAGGTGCTATGAGGCTTTAAATAGGCTGGATTTTGCTCTAAGAGATGTCAGTACTGTTCTGAAGATGGAACCAAATAATGTCATGGCATTAGAGATCTCAGAAAAAGTGAAAAATGCACTTGAGGAGAAAGGATTGAGAGTTAACGATACAATAATTGAGTTGCCTCCAAATTATGTCGAACCTCCTAGTGCTTTGACTCCAGAAAAGGCAGTGAAAGAGAAAATGCGCAAGAAGAAGGGCTATAAAGAGGAAAAGAAGGCTTCTAATGACAAAATTCTAGAAGGGGAAACTGAGGAGAAATCTGAGGAGAAGGCTGAGGACAGTATTGTGGTCGTTGAGAAGAAGATCAACGGATCCAAGAAGAAGAAGGCCAAGGAAAAAATTGATGAGAAGAAGGCTGATATAAAGGAAGTTATAGAGGAAAGAAGAAATGGTAGAAGGGAACACGTTCCTAACAAAACAGTTAAACTTATTTTTGGTGATGATATAAGATGTGCTGAACTGCCTATCAATTGTAGCCTCTTCCAGTTAAGAGAAGTTATTCAAGATCGATTCTCGAGCCTAGGAGCTTTTCTTGTCAAATACAGGGACCAGGAAGGTGATTTAGTCACAATCACTTCTGAGGATGAATTAAGATGTGCTGAAACAGGATCTCATAGTTCTATACGACTGTACATAGTAGAAGCCACTCCTGAGCAGGATCCACTTTTTGAGAAATTTAAAGTGAAGGAGGCGGAAGTGGTTGGCATTAACATTGCACTTGAGAATGGTTGTGTGGGAAAAGCAAATGGAATTGATAGCTCTTCTTGCATTGAGGATTGGATAATTCAGTTTGCCAAATTGTTCAAGAATCATGTTGGTTTTGAATCTGACAGTTATTTGGATTTTCACGAACATGGTATGAAGCTCTATTCCGAGGCTCTGGAGGAGACGGTTACAACCGAAGAAGCACAAGGCCTATTTGACATGGCAGGAGATAAGTTCCAAGAGATGACTGCTCTTGCATTGTTCAACTGGGGAAATGTGCATATGTCTAAGGCAAGGAAAAAGGTATATAAAACAGAAGACTCTTCTAAAGAGCATCTATGCGAACTGACAAAGAGTTCTTATGAGTGGGCACTGGAAGAGTATTTAAAGGCAGGAGAAAAATATGATTCAGCCATTAAAATTAAGTCAGATTTTCACGAAGGCTTCTTGGCGCTGGGGCTGCAGCAGTTTGAGCAAGCAAAACTTTCGTGGTATCATGCACTCAGTAGTAATGCAGACTTATTAACATGGCCTTCCGCTGAGGTTCTTCATCTTTACAACAATGCTGAAGAAAATATTGAGAGAGGAATGCAGATATGGGAAGAATCTGAAAAGCAGAACTTGAGTAAAACGTCTGATTCAAACTATGCTATATTGGATTTGCAGAACATGGGGTTGGATGGGCTTTTTAAAACTATGTCCTTAGATGAACTTGCAGCACAGGAGGCACATATGAGGTCTCAGATAAATCTCCTATGGGGTACCATTCTATATGAACGCTCAACTGTGGAGTTCAAATTAGGGCTACCTATGTGGCATGAAACTCTTGCGGTTTCAGTTGAGAAATTTGAACTTGCAGGAGCTTCTCCAACAGATATAGCTGTAATTTTGAAGAACCACTGTTCAAATAATACTGCAGTAGATGGTCTTGCCTTCAAAATTGATGAAATAGTACAGGCATGGAATGAGATGTACAAAGCTAAAATGTGGAAGAGTGGAGTTCCATCATTTCGTTTGGAACCCTTATTTAGAAGGCGAGTTTCAAAAACTTATCATGCATTTGAGCTTGCATGA 2172 0.401 MGKKTKQIGEIREDSKMGDSSPKAYDNDTMVFISMSHELKNEGNKLFQKRDLEGAILKYEKALKLLPRNHIDVSYLRSNMAACYMQKGVSEFPRAIHECDLALEVTPKYGKALLKRARCYEALNRLDFALRDVSTVLKMEPNNVMALEISEKVKNALEEKGLRVNDTIIELPPNYVEPPSALTPEKAVKEKMRKKKGYKEEKKASNDKILEGETEEKSEEKAEDSIVVVEKKINGSKKKKAKEKIDEKKADIKEVIEERRNGRREHVPNKTVKLIFGDDIRCAELPINCSLFQLREVIQDRFSSLGAFLVKYRDQEGDLVTITSEDELRCAETGSHSSIRLYIVEATPEQDPLFEKFKVKEAEVVGINIALENGCVGKANGIDSSSCIEDWIIQFAKLFKNHVGFESDSYLDFHEHGMKLYSEALEETVTTEEAQGLFDMAGDKFQEMTALALFNWGNVHMSKARKKVYKTEDSSKEHLCELTKSSYEWALEEYLKAGEKYDSAIKIKSDFHEGFLALGLQQFEQAKLSWYHALSSNADLLTWPSAEVLHLYNNAEENIERGMQIWEESEKQNLSKTSDSNYAILDLQNMGLDGLFKTMSLDELAAQEAHMRSQINLLWGTILYERSTVEFKLGLPMWHETLAVSVEKFELAGASPTDIAVILKNHCSNNTAVDGLAFKIDEIVQAWNEMYKAKMWKSGVPSFRLEPLFRRRVSKTYHAFELA 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01197 723 ProSiteProfiles PB1 domain profile. 269 346 IPR000270 GO:0005515
Phco8g01197 723 MobiDBLite consensus disorder prediction 184 216 - -
Phco8g01197 723 SUPERFAMILY TPR-like 37 149 IPR011990 GO:0005515
Phco8g01197 723 MobiDBLite consensus disorder prediction 1 22 - -
Phco8g01197 723 Gene3D Tetratricopeptide repeat domain 34 166 IPR011990 GO:0005515
Phco8g01197 723 Coils Coil 238 265 - -
Phco8g01197 723 CDD PB1 271 343 - -
Phco8g01197 723 ProSiteProfiles TPR repeat profile. 110 143 IPR019734 GO:0005515
Phco8g01197 723 PANTHER PROTEIN CLMP1 12 721 IPR044517 -
Phco8g01197 723 MobiDBLite consensus disorder prediction 1 21 - -
Phco8g01197 723 MobiDBLite consensus disorder prediction 180 216 - -
Phco8g01197 723 SMART PB1_new 269 346 IPR000270 GO:0005515
Phco8g01197 723 SUPERFAMILY CAD & PB1 domains 268 355 - -
Phco8g01197 723 Pfam PB1 domain 271 344 IPR000270 GO:0005515
Phco8g01197 723 Coils Coil 188 208 - -
Phco8g01197 723 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Phco8g01197 723 SMART tpr_5 36 69 IPR019734 GO:0005515
Phco8g01197 723 SMART tpr_5 74 109 IPR019734 GO:0005515
Phco8g01197 723 SMART tpr_5 110 143 IPR019734 GO:0005515
Phco8g01197 723 Gene3D - 269 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01197 Phco-Chr8 12564025 12566310 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01197 8 12564025 12566310 Phco8g01197 8 12564025 12566310 ECH
Phco8g01197 8 12564025 12566310 Phco7g02528 7 44084796 44089084 PCT