Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01186 ATGGGTTGTCAGATAAGGCTTCTGGGTCTGTGTCTATGGATGTACTTGGCAAGCTTAAGCTTCATTGGAGTGGGTGCTGTGTTTGGAAGAGGAGGAGCAGTTGAGAAAGGGATTGTTTTAGTTCATGGGAAAAGTGCTATAGGAAGGATTGATGATGATTTTGTCTGTGCAACTCTGGATTGGTGGCCTCCTCAGAAATGTGACTATGGAAAATGTAGTTGGGGTCAAGCTTCTCTGCTTAATCTGGACCTCAACAGCAAAACTTTGTTGAATGCTATAAAAGCCTTTTCATCCTTGAAACTTAGATTAGGTGGCACTTTGCAAGACAAGCTCATATATGGAACTGAAGATAATCGGCAACCCTGTACTCCTTTTGTTAAGGCTAATGAAATGTTTGGTTTCACTGGAGGGTGCTTACCGATGTCTAGGTGGGATGAGCTAAACAACTTTTTCAAGAAAGCAGGGGTTAAGGTTATCTTTGGATTAAATGCTCTTGCTGGAAAATCTATAAAGTCTGGTTTTGCTGTTGGACCTTGGAACTACACCAATGCGGAATCTTTAATACGATACACTGTCAGAAAGAAGTACCACATTCATGGTTGGGAACTTGGGAATGAACTGTGTGGAAATGGAATTGGGGCAAGTGTTTCAGCAGATCAATATGCTTCTGATGTAGTTGCTTTAAGAAACGTAATTCAAAGTGCATATAGAGGGATTAAACCAAAGCCACTTGTTATTGCACCTGGAGGCTTCTTTGAGTACAATTGGTTCAAGGAATTTATAAGCAGATATAATAAATCCGCAGATGTGATCACCCACCACATTTATAACCTTGGGCCAGGAGTTGATGACCACATAACTGAAAAAATTCTTGACCCTTTCTATCTGGATGGAGAGGCTAACACATTCAACAGGCTCAAAGGTATACTTCAAAGTTCATCAAACAAGGTAAAATCATGGGTTGGTGAGTCAGGAGGGGCCTATAATAGTGGCCATCATCTTGTGTCTGATGCATTTGTCTACAGTTTCTGGTATTTGGACCAGCTTGGCATGTCAGCTGTTTATGACACCACAACTTACTGCAGACAAACTTTGATAGGAGGAAACTATGGTTTACTGAATACTAGTACTTTCATGCCAAATCCAGACTATTATAGTGCACTTTTATGGCATCGACTCATGGGAGGGCGTGTCCTTTCAACCACCTTCTACGGTACAAAGAAGATAAGAACTTATGCACACTGTGCAAAGGAATCCAAAGGGATCACAATACTATTGCTCAATTTGGACAACAGCACCACTGTTCAAGTCAACGTGGACTTAACATTTAACAAGTCACCTCACCGTAGAGTGGATGAACCAGCCAGACGAGAGTACCATTTGACAGCACCAGACAGAAATTTACATAGCCAAATCATGTTGCTAAATGGAAAAACTTTAAGTGTAAACTCAGCTGGTGAAATTCCTCCTTTGGAACCTATATATGTAGACTCAACAAAGCCAATAACTGTTGGTCCTTTATCTATTGTATTTGCTCATATACCAAATGTTCTTCTTTCAGCATGCAGCTAG 1572 0.4078 MGCQIRLLGLCLWMYLASLSFIGVGAVFGRGGAVEKGIVLVHGKSAIGRIDDDFVCATLDWWPPQKCDYGKCSWGQASLLNLDLNSKTLLNAIKAFSSLKLRLGGTLQDKLIYGTEDNRQPCTPFVKANEMFGFTGGCLPMSRWDELNNFFKKAGVKVIFGLNALAGKSIKSGFAVGPWNYTNAESLIRYTVRKKYHIHGWELGNELCGNGIGASVSADQYASDVVALRNVIQSAYRGIKPKPLVIAPGGFFEYNWFKEFISRYNKSADVITHHIYNLGPGVDDHITEKILDPFYLDGEANTFNRLKGILQSSSNKVKSWVGESGGAYNSGHHLVSDAFVYSFWYLDQLGMSAVYDTTTYCRQTLIGGNYGLLNTSTFMPNPDYYSALLWHRLMGGRVLSTTFYGTKKIRTYAHCAKESKGITILLLNLDNSTTVQVNVDLTFNKSPHRRVDEPARREYHLTAPDRNLHSQIMLLNGKTLSVNSAGEIPPLEPIYVDSTKPITVGPLSIVFAHIPNVLLSACS 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01186 523 PANTHER HEPARANASE-RELATED 32 522 - -
Phco8g01186 523 Gene3D Glycosidases 71 392 - -
Phco8g01186 523 Pfam Glycosyl hydrolase family 79, N-terminal domain 38 350 IPR005199 GO:0016020|GO:0016798
Phco8g01186 523 FunFam heparanase-like protein 3 74 392 - -
Phco8g01186 523 SUPERFAMILY (Trans)glycosidases 50 394 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01186 Phco-Chr8 12480064 12482927 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01186 8 12480064 12482927 Phco8g01186 8 12480064 12482927 ECH
Phco8g01186 8 12480064 12482927 Phco7g02529 7 44106932 44110598 PCT