Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01158 ATGTCGGGTGGCACGCAGAAGAGTCTAAGAAAGGCACTCGGGGCACTTAAGGACACCACAACAGTCTCATTGGCTAAGGTCAACAGTGATTACAAGGAATTGGACATTTCTATAGTTAGAGCCACAAATCATGTTGAACGTCCAGCGAAGGAAAAACACATACGAGCTATATTTGCAGCTATCTCAGCTACAAGACCTAGAGCCGATGTTGCCTATTGCATCCACGCTCTTGCCCGGCGATTATCAAAGACACATAACTGGGCAGTTGCATTGAAAACTTTAATTGTTATTCACCGTGCTCTAAGGGAAGTGGATCCTACATTTCATGAAGAACTCATTAATTATGGGAGAAGTAGAAGTCATATGCTCAACATGGCTCATTTTAAAGATGATTCCAGTCCAAATGCATGGGATTATTCTTCATGGGTGCGCACTTATGCATTATTTTTGGAGGAAAGGCTGGAATGTTTTCGTGTGTTGAAGTATGACATTGAGGCAGACCGCCCTAGGACCAAAGATTTGGATACCGCAGAACTATTAGAGCAGTTGCCAGCTTTACAACAACTTCTCAATCGAGTTATTGGATGCCAGCCACACGGGGCAGCTGTAAATAACTTTGTCATTCAGTTAGCACTCTCAATGGTTGCTTCAGAAAGCATTAAAATTTATCAAGCTATTAGTGATGGCACAGTCAATATGGTTGACAAGTTTTTTGAGATGCAACGTCATGATGCTCTGAAAGCTCTTGATATATACAGGAGGGTTGGGCAGCAGGCTGAGAGACTTTCAGAGTTTTATGAAATATGCCGTAATCTTGATATTGGACGTGGAGAGAAGTTTATAAAAGTTGAACAGCCCCCTTCATCATTTCTGCAAGCAATGGAAGAGTATGTCAAAGACGCTCCCCAGGGACAAATAGTTCGTAAGGATCTGGCTATTGAAAACAAAGAAGTTTTAGCTATTGAATATAAAAAGACAACAGAAGTGCAAGAGGAACGCCCACCCTCACCTTCACCCTCGCCTCCTCCACCTCCTCCTTCTGAACCTGTGAAAGTGGAAGCACCACCAGTACAACCACCACCTGATCTATTGAATTTGGAGGATCCAGTTCCAGCTGCTTTAGAGTTGGAAGAGAAAAATGCATTGGCTTTAGCCATTGTTCCCATTGCTGTTGAACAACAACCTTCTGCTGTTTCAAATCCAACAAATGGAACTACAGGATGGGAATTGGCACTTGTTACTGCTCCTAGTTCAAATGAGAGTGCTGCAGCTGCTAGTAAATTGGCTGGAGGTTTGGACAAGCTTACTTTAGACAGCCTTTACGATGATGCACTCAGGAGAAACAACCAAAGTGTGAGCTATAATCCATGGGAGTCAGCACCAGTAGGAAACTCGATACAACCAACAATGCATGATCCATTTTTTGCCTCTACTGCAGTTGCTGCTCCACATTCTGTTCAGATGGCTGCTATGTCCAACCAGCAGCAAGCTTTCATGTATCAGCAGCAGCAGCAGCAAATGATGATGATGGCCCCTCAACAACAATCAGTAAATCCTTTCGGAAATCCTTATGGAGCCACTGTTCACCCCTATGGCTCAGGTATGCCTGTTCAATCATACAATCCATATACAGGTCTCATCTAG 1644 0.4349 MSGGTQKSLRKALGALKDTTTVSLAKVNSDYKELDISIVRATNHVERPAKEKHIRAIFAAISATRPRADVAYCIHALARRLSKTHNWAVALKTLIVIHRALREVDPTFHEELINYGRSRSHMLNMAHFKDDSSPNAWDYSSWVRTYALFLEERLECFRVLKYDIEADRPRTKDLDTAELLEQLPALQQLLNRVIGCQPHGAAVNNFVIQLALSMVASESIKIYQAISDGTVNMVDKFFEMQRHDALKALDIYRRVGQQAERLSEFYEICRNLDIGRGEKFIKVEQPPSSFLQAMEEYVKDAPQGQIVRKDLAIENKEVLAIEYKKTTEVQEERPPSPSPSPPPPPPSEPVKVEAPPVQPPPDLLNLEDPVPAALELEEKNALALAIVPIAVEQQPSAVSNPTNGTTGWELALVTAPSSNESAAAASKLAGGLDKLTLDSLYDDALRRNNQSVSYNPWESAPVGNSIQPTMHDPFFASTAVAAPHSVQMAAMSNQQQAFMYQQQQQQMMMMAPQQQSVNPFGNPYGATVHPYGSGMPVQSYNPYTGLI 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01158 547 ProSiteProfiles ENTH domain profile. 26 164 IPR013809 -
Phco8g01158 547 FunFam Clathrin assembly protein AP180 8 164 - -
Phco8g01158 547 SMART enth_2 32 164 IPR013809 -
Phco8g01158 547 SUPERFAMILY GAT-like domain 169 300 - -
Phco8g01158 547 MobiDBLite consensus disorder prediction 334 366 - -
Phco8g01158 547 Gene3D ANTH domain 165 318 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Phco8g01158 547 MobiDBLite consensus disorder prediction 325 366 - -
Phco8g01158 547 PANTHER CLATHRIN ASSEMBLY PROTEIN 7 502 IPR045192 GO:0048268|GO:0072583
Phco8g01158 547 SUPERFAMILY ENTH/VHS domain 33 165 IPR008942 -
Phco8g01158 547 CDD ANTH_N 34 157 - -
Phco8g01158 547 Gene3D - 7 164 IPR008942 -
Phco8g01158 547 Pfam ANTH domain 33 300 IPR011417 GO:0005543
Phco8g01158 547 FunFam putative clathrin assembly protein At5g35200 166 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01158 Phco-Chr8 12172366 12176758 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01158 8 12172366 12176758 Phco8g01158 8 12172366 12176758 ECH
Phco8g01158 8 12172366 12176758 Phco7g02347 7 41164383 41177115 PCT