Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00863 ATGGCTCTTTCTCTTCTTCTGTGTCCTCTTCTTGCCACCTTTCTTTTCATGCAAGCTCTGGCAGATACTTCCTTTGTTCAATCTCGTGCAGTATATTACCCAAACTCTGAAGAAAATGGCACAGATGTTGGTGCATGTGGATTTGGTTCCTTTGGTGCCACGGTTAATGGTGGGGATGTATCAGCTGCATCTAATCTTTATCGAAACGGTGTTGGCTGTGGTGCCTGTTACCAGGTGAGATGTAGCAATAGTGCTTATTGCTCAGGAAATGGTGTCACGATAGTAATAACTGACCAAGGCTCAAGTGCTAACACTGACTTCATTCTTAGCCAACGTGCTTTTGGTGGGATGGCTATCAACAAGGATGCAGCTGCTTCTCTATTAGCTCTTGGCATAGTTGATATTGAGTATAGACGAGTTTCATGCAGCTACCCAAACAAAAACATTACAGTTAAGATACATGAGAGTAGCAACAACCCTCACTATTTGGGTTTTGTCTTATGGTTTCAACAAGGAAGTAGAGATATAACTGCTGTGCAACTTTGCGAGACTCAGAACTTTGTGTGCAAGTTACTGGATCGGAGTCATGGGGCAGTATGGACCACTACCGCGCCACCGAGTGGACCTTTGGCTTTGAGGATGTTGTTTAGTGCTGAAGAAGAGGAAGACGAATCATGGGTCGTTCCAGTTAATGACATTCCACAAGACTGGAAGGCTGGAGAAACGTACGACTTAGGGGTACAAGTGGACAAATAG 756 0.4444 MALSLLLCPLLATFLFMQALADTSFVQSRAVYYPNSEENGTDVGACGFGSFGATVNGGDVSAASNLYRNGVGCGACYQVRCSNSAYCSGNGVTIVITDQGSSANTDFILSQRAFGGMAINKDAAASLLALGIVDIEYRRVSCSYPNKNITVKIHESSNNPHYLGFVLWFQQGSRDITAVQLCETQNFVCKLLDRSHGAVWTTTAPPSGPLALRMLFSAEEEEDESWVVPVNDIPQDWKAGETYDLGVQVDK 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00863 251 PANTHER EXPANSIN-B3 11 248 - -
Phco8g00863 251 Gene3D - 144 249 IPR036749 -
Phco8g00863 251 Gene3D - 12 143 IPR036908 -
Phco8g00863 251 Pfam Lytic transglycolase 63 137 IPR009009 -
Phco8g00863 251 CDD DPBB_EXLB_N 26 142 - -
Phco8g00863 251 SUPERFAMILY Barwin-like endoglucanases 13 146 IPR036908 -
Phco8g00863 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
Phco8g00863 251 Pfam Expansin C-terminal domain 149 219 IPR007117 -
Phco8g00863 251 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Phco8g00863 251 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Phco8g00863 251 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Phco8g00863 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 245 IPR007117 -
Phco8g00863 251 SUPERFAMILY PHL pollen allergen 147 244 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00863 Phco-Chr8 8797239 8798954 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01275 4 10803367 10804839 Phco8g00863 8 8797239 8798954 PCT