Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01275 ATGGCGCTTTATCTTTTCTATACTTTTCTTGTTACCACCTTGATTTTCATGCAAACTCTGGCTGATACTTCATGCACCGATTGTTTCATTCATTCTCGAGCAGCATATTATCCAAATTCTGAAGAACACGGAACTGATGTTGGTGCATGCGGGTTTGGTTCCTTTGGTGCTACCGTCAATGGCGGGGATGTATCAGCTGCATCTTCTCTTTACCGAAGTGGTGTTGGTTGTGGCGCCTGTTACCAGGTGAGGTGTACCAACAGCGCCTATTGCTCAAACAATGGTGTGACTGCAGTTATAACTGACCAAGGTTCAAGTGACAACACAGATTTCATTCTTAGCAAACATGCCTTCAGCCGGATGGCTCAAACCACTGATGCTGCTGCTTCTCTACTAGCCCTTGGTGTGGTTGATATTGAATATAGACGTGTTTCATGCAGCTACCCAGATAAAAATATAACAATCAAGATAGACGAGAGCAGCAACAACCCTTACTATTTGGCTTTTGTGATTTGGTATCAACAAGGAAGGAGAGACATAACTGCTGTGCAGCTCTGTGAGACTCAAAACTTTGTGTGCAAGTTACTGGATCGGACCCATGGAGCTGTGTGGACTGCTACCTCTCCACCAAGTGGACCTTTGTCTTTAAGAATGTTGTTTAGTGATGAAGAAGAGGAAGAAGAAACTTGGGTTGTTCCAGCAAATAACATACCTGGAGACTGGAAGGCTGGAGAAACATACGATTCAGGGGTACAAGTGAACCAATAG 768 0.4414 MALYLFYTFLVTTLIFMQTLADTSCTDCFIHSRAAYYPNSEEHGTDVGACGFGSFGATVNGGDVSAASSLYRSGVGCGACYQVRCTNSAYCSNNGVTAVITDQGSSDNTDFILSKHAFSRMAQTTDAAASLLALGVVDIEYRRVSCSYPDKNITIKIDESSNNPYYLAFVIWYQQGRRDITAVQLCETQNFVCKLLDRTHGAVWTATSPPSGPLSLRMLFSDEEEEEETWVVPANNIPGDWKAGETYDSGVQVNQ 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01275 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 249 IPR007117 -
Phco4g01275 255 Pfam Expansin C-terminal domain 153 232 IPR007117 -
Phco4g01275 255 SUPERFAMILY PHL pollen allergen 151 249 IPR036749 -
Phco4g01275 255 Pfam Lytic transglycolase 67 141 IPR009009 -
Phco4g01275 255 PANTHER EXPANSIN-B3 15 252 - -
Phco4g01275 255 CDD DPBB_EXLB_N 30 146 - -
Phco4g01275 255 SUPERFAMILY Barwin-like endoglucanases 18 150 IPR036908 -
Phco4g01275 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Phco4g01275 255 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Phco4g01275 255 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Phco4g01275 255 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Phco4g01275 255 Gene3D - 148 253 IPR036749 -
Phco4g01275 255 Gene3D - 17 147 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01275 Phco-Chr4 10803367 10804839 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01275 4 10803367 10804839 Phco8g00863 8 8797239 8798954 PCT