Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00853 ATGGCCGTTCAAGCTCAATATCCATCAAATGTTCTCTTTCTAAACAGGAACAACGCCCAAGAAGTCCTTGACTATTCATTGCAGCAGCAGCAACAACAACAAGGAGGCCTTTTAAACCAACCCCACATGCTATTCAACAACGACAATGGAAGTAACAATGTGAACAACAACAATTGTCGGAAGAGAGGCAGAGAAGACACCACTGTTGCAAACAACACAATGACCACAACAACTTCTAATCTTATTAATCCTTTCTCTTTACAATCTCAGCCTCCACAACTTATTCATCTCTCTCAGTTACAGAATCATCAACAACAACAACAAAATGTCGTCTCTACTGGTCTCCGCTTATCCTTCGATGACCATCAACAGCAACAACAAAGACTACAGCTTCATCAAAATCAATCTCAACAACAACTATTACTACATGCCTCTCACTCTTCTGCTTTCTCTTCTCTATTATCCCAAGGCTTGGCTTCTCAAATCAAACAACAACGTGATGAAATTGATCAATTCCTCCAAGCCCAGGGAGAACAACTGCGGCGGGCATTGGCTGAGAAGAGGCAGAAGCATTATAACGCGCTGCTGGGCGCGGCCGAGGAAGCCGTGGCACGGCGGCTCCGAGAGAAGGAGGCGGAAGTGGAGAAGGCCACGCGCAAGAACGCAGAGCTAGAAGCGCGGGCGGCCCAGCTGAGCGTGGAGGCCCAAGTGTGGCAGGCCAAAGCCCGGGCCCAGGAAGCAACCGCGGCTTCTCTCCAGGCTCAACTACAGCAGACCATGTGCCAGGGCGGCGAAGAAGTGGCCGCCGGCGTGTCGTGCGCCGTGGAAGGCCAGGCTGAGGATGCAGAATCGGCTCACATCGATCCAGAGCGCGTGGTGTTAGCAGTGGCGCGTCCCAAATGCAGAGGGTGCACGAAGCGCGTGGCCTCGATCGTGGTTTTGCCGTGTCGGCACTTGTGTATCTGTACAGAATGCGATGCGCATTTCCGAGCGTGCCCAGTTTGTCTCACACCCAAGAATTCAACCGTTGAAGTTTTTCTCTCTTAA 1047 0.51 MAVQAQYPSNVLFLNRNNAQEVLDYSLQQQQQQQGGLLNQPHMLFNNDNGSNNVNNNNCRKRGREDTTVANNTMTTTTSNLINPFSLQSQPPQLIHLSQLQNHQQQQQNVVSTGLRLSFDDHQQQQQRLQLHQNQSQQQLLLHASHSSAFSSLLSQGLASQIKQQRDEIDQFLQAQGEQLRRALAEKRQKHYNALLGAAEEAVARRLREKEAEVEKATRKNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQTMCQGGEEVAAGVSCAVEGQAEDAESAHIDPERVVLAVARPKCRGCTKRVASIVVLPCRHLCICTECDAHFRACPVCLTPKNSTVEVFLS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00853 348 ProSiteProfiles Zinc finger RING-type profile. 301 335 IPR001841 -
Phco8g00853 348 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 281 347 - -
Phco8g00853 348 Coils Coil 200 262 - -
Phco8g00853 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 348 IPR013083 -
Phco8g00853 348 Pfam Zinc finger, C3HC4 type (RING finger) 300 340 - -
Phco8g00853 348 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 40 345 IPR017066 -
Phco8g00853 348 PIRSF SBP1_RNase_bind 1 348 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00853 Phco-Chr8 8671685 8673015 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00853 8 8671685 8673015 Phco8g00853 8 8671685 8673015 ECH
Phco4g01290 4 11054340 11055645 Phco8g00853 8 8671685 8673015 PCT