Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01290 ATGGCTGTTCAAGCTCAATACCCCTCCAATGTACTCTTCCTAAACTGCAGCAAAAGTGGAAAAGAACCGCATGACTATTCTTTGCCAGGAGAACTCCTTGATCATAATCAATCTCCTATGTTATTCAACAACGGAGGTAGTAATTCTCGGAAGAGAGGAAGAGAAGGAACAGGAGCTAAGGCCATTGGGCCAAACCTTGTGAATTCATTCTCTTTACAATCACAATCTCCACAGCTCATAGACCTCACTCAACTTCATAATCAAAATGTAGTCTCCACGGGGCTGGGGTTATCTTTTGGTGACCAACAGCAAAGACAACAACTACATCATCACCAACAACAACATGGGTGTCACTCCTCTTCTTTCCTATCTCAATTATCGGATGGTTTGACCTCGCAAATCAAACAACAGCATGACGAAATTGACCAATTCCTTCAAGCCCACGGCGAGCAATTGCGGCGGGCATTAGCGGAGAAGAGAGGGAGACATTATCGAACGCTGCTAAGGGCAGCGGAGGAATCAGTGTTGCGGCGGCTGCGGGAGAAGGAAGCAGAGGTAGAGAAAGCGACGCGGCGCAACGCAGAGTTGGAGGCGCGCGCGGCGCAGCTTGGCTTGGAGACCCAGCTTTGGCAAGCTAAGGCGAAGGCGCAGGAAGCGACGGCGGCATCGTTGCAGGCGCAGCTGCAGCAGGCCATTATGAGCGGGGAGGACGGCGGGGGAGGGCTGTCATGTGCCGGGGGCGAGGCGGAGGATGCTGAGTCAGCATACGTTGACCCGGAGCGAGTTGGTCCGAAATGCAGAGGGTGCGCTAAACGGGTGGCTTCCGTGGTGGTTTTGCCGTGTCGCCACCTATGCATCTGCGCTCAGTGCAACACACATTTTCGGGCATGTCCCGTTTGTCTCACCGTTAAAAATTCAACCGTTCAAGTCTATCTGTCTTAA 942 0.5223 MAVQAQYPSNVLFLNCSKSGKEPHDYSLPGELLDHNQSPMLFNNGGSNSRKRGREGTGAKAIGPNLVNSFSLQSQSPQLIDLTQLHNQNVVSTGLGLSFGDQQQRQQLHHHQQQHGCHSSSFLSQLSDGLTSQIKQQHDEIDQFLQAHGEQLRRALAEKRGRHYRTLLRAAEESVLRRLREKEAEVEKATRRNAELEARAAQLGLETQLWQAKAKAQEATAASLQAQLQQAIMSGEDGGGGLSCAGGEAEDAESAYVDPERVGPKCRGCAKRVASVVVLPCRHLCICAQCNTHFRACPVCLTVKNSTVQVYLS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01290 313 ProSiteProfiles Zinc finger RING-type profile. 266 300 IPR001841 -
Phco4g01290 313 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 251 312 - -
Phco4g01290 313 PIRSF SBP1_RNase_bind 1 313 IPR017066 -
Phco4g01290 313 MobiDBLite consensus disorder prediction 37 51 - -
Phco4g01290 313 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 43 310 IPR017066 -
Phco4g01290 313 Pfam Zinc finger, C3HC4 type (RING finger) 265 302 - -
Phco4g01290 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 313 IPR013083 -
Phco4g01290 313 MobiDBLite consensus disorder prediction 24 61 - -
Phco4g01290 313 Coils Coil 169 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01290 Phco-Chr4 11054340 11055645 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01290 4 11054340 11055645 Phco4g01290 4 11054340 11055645 ECH
Phco4g01290 4 11054340 11055645 Phco8g00853 8 8671685 8673015 PCT