Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00685 ATGGCTGTCTCTCTTCAACATTGTAGCTTCTTGTTGATTTCGATCTTCATAATGATGGGAAAGCCAGCAACAGTAGCGGCTTCATTTCAGCCTAGTCAATGGGCAGAAGCCCATGCCACATTTTATGGTGACGAGAGTGCTTCTGCCACCATGGGAGGAGCATGTGGATATGGAAATTTGTTGATAAACGGTTATGGGACAGACACAGCAGCTCTGAGCTCGACATTGTTCAACGATGGATATGCATGTGGAGCATGTTACGAGATAAAGTGTGTCCAATCGAGTGCATGCTTCTCCAATGTGGTTTCCACCACAGTGACTGCCACCAATATTTGCCCTCCTAATTGGGCCGAACCCTCTGATAACGGAGGGTGGTGCAACCCACCACGTTCACATTTTGATATGTCCAAGCCCGCTTTCATGAAAATTGCACAGTGGAAAGCTGGAATCGTTCCTGTTATGTACCGCAGAGTGGCTTGCGTGAAGAGTGCGGGGCTACGATTCTCTTTCCAAGGAAATGGGTATTGGTTACTTGTGTACGTGATGAATGTGGGAGGAGGAGGAGACATTGCGAACATGTGGGTGAAAGGAAGTGGACCTGAGTGGATCAGCATGAGCCACAATTGGGGTGCTTCTTACCAAGCATTTGCAACGTTGAGTGGTCAATCTCTTTCGTTTAAGGCTACTTCTTACACCACCAAAGAGACCATAATAGCTTGGAATGTTGCTCCCACCAACTGGGGCGTAGGACTAACTTATTCCTCCCAGGGAGGGTTTGGTGGGCATGACATGTGCTATGCTACCATGGCAGTTGGTATGGTTAAGGAAGAGGTTGTATGGGTTGTGGGTCGCGTGACTCTGTATCATTTTGGACAATTGTATAAGAAGAGAGGGTTATTGGGTCCGGTGGTGGAGCCAGAGCGAGGAAACAGAGGGGTCCACGATCCACGCCTCGCCACTTCCTTCCCAGATCGCGACACCGGAATCGTCATGGACCGCTCCTCCGCCCGCCTCAATGTTCCTCCGCCCGCCGCCTCCGGAGCCTCTGCGGAGGCGACTCTCCGCCACGTGGACCGCCTCATAAACTCCAACCACTACACGTCGCCTTCCAGGACAATCTACTCCGACCGCTTCATTCCCAGCAGATCTGCCTCTAAATTCGCGCTCTTCGACATCGCCTCGCTTCCCGAGGGCCGCGACGACAGCTCCAGCGCCTACACCACGCTCCTCCGCACCGCCCTCTTCGGCCCCGATGCCGCCGGTCTCGAGCCGCCCCTCACGCCGCAGAAAACGGCCTCGCCGCCCATGACGCTCCCCAGCCGGAATATTTTCCGGTACAAGACCGAGACGCGCCAGTCCATGCACTCGCTCTCGCCGTTCATGTGCGACGATTCCGTACCCGGAGTTAATCACGGCCCGGTCAAGGCTCCCAGGAAGGTTCCGAGGTCGCCGTTTAAGGTTCTGGATGCGCCTGCGCTGCAAGATGATTTTTACCTGAATCTAGTGGATTGGTCTTCGCATAATGTCTTGGCTGTTGGTCTGGGTAACTGTGTTTATCTATGGAATGCTTGTAGCAGCAAGGTTACTAAATTATGTGACTTGGGGATTGATGACCTCGTTTGTTCGGTAGGCTGGGCTCAACGTGGTACACACCTTGCTGTTGGAACTAGCAATGGTAAAGTTCAGATTTGGGATGCATCTCGTTGCAAGAAGATAAGGTCTATGGAGGGTCATCGGTTACGTGTTGGAGCCTTGGCCTGGAGTTCATCTCTTTTGTCTTCTGGTGGCAGGGATAAGAATATTTATCAAAGAGATATCCGTGCACAAGAAGATTTTGTCAGTAAACTGTCAGGGCACAAATCAGAGGTTTGTGGACTGAAGTGGTCTTATGATAACCGTGAGTTGGCATCTGGAGGAAATGACAACAGATTGTTTGTGTGGAATCAACACTCAACTCAGCCTGTCCTGAAGTACTGCGAGCATACAGCAGCTGTTAAAGCTATTGCATGGTCTCCTCATCTTCATGGACTTCTTGCATCTGGGGGAGGAACTGCAGATCGATGCATACGTTTCTGGAATACAACCACCAACTCACACTTAAGCTGCATGGACACTGGAAGTCAGGTTTGCAATCTTGTGTGGTCTAAAAATGTCAATGAACTCGTAAGCACACATGGTTACTCCCAGAACCAGATAATTGTTTGGAGATACCCCACCATGTCAAAGCTGGCCACTCTTACTGGCCACACATACAGAGTTCTTTATCTTGCCATTTCACCAGATGGACAGACAATTGTAACTGGAGCTGGAGATGAAACACTTAGGTTCTGGAATGTATTCCCATCCCCTAAATCACAGAATACTGACAGTGAAATCGGAGCATCATCTCTTGGAAGAACTACTATTAGGTGA 2412 0.5029 MAVSLQHCSFLLISIFIMMGKPATVAASFQPSQWAEAHATFYGDESASATMGGACGYGNLLINGYGTDTAALSSTLFNDGYACGACYEIKCVQSSACFSNVVSTTVTATNICPPNWAEPSDNGGWCNPPRSHFDMSKPAFMKIAQWKAGIVPVMYRRVACVKSAGLRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSGPEWISMSHNWGASYQAFATLSGQSLSFKATSYTTKETIIAWNVAPTNWGVGLTYSSQGGFGGHDMCYATMAVGMVKEEVVWVVGRVTLYHFGQLYKKRGLLGPVVEPERGNRGVHDPRLATSFPDRDTGIVMDRSSARLNVPPPAASGASAEATLRHVDRLINSNHYTSPSRTIYSDRFIPSRSASKFALFDIASLPEGRDDSSSAYTTLLRTALFGPDAAGLEPPLTPQKTASPPMTLPSRNIFRYKTETRQSMHSLSPFMCDDSVPGVNHGPVKAPRKVPRSPFKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDLVCSVGWAQRGTHLAVGTSNGKVQIWDASRCKKIRSMEGHRLRVGALAWSSSLLSSGGRDKNIYQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSEIGASSLGRTTIR 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00685 803 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 362 800 IPR033010 GO:0010997|GO:0097027|GO:1904668
Phco8g00685 803 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 746 779 - -
Phco8g00685 803 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 165 IPR007112 -
Phco8g00685 803 Pfam WD domain, G-beta repeat 742 778 IPR001680 GO:0005515
Phco8g00685 803 Pfam WD domain, G-beta repeat 613 648 IPR001680 GO:0005515
Phco8g00685 803 Pfam WD domain, G-beta repeat 653 693 IPR001680 GO:0005515
Phco8g00685 803 CDD DPBB_EXPA_N 33 160 - -
Phco8g00685 803 ProSiteProfiles Trp-Asp (WD) repeats profile. 616 657 IPR001680 GO:0005515
Phco8g00685 803 ProSiteProfiles Trp-Asp (WD) repeats profile. 746 779 IPR001680 GO:0005515
Phco8g00685 803 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 616 648 - -
Phco8g00685 803 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Phco8g00685 803 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Phco8g00685 803 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Phco8g00685 803 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Phco8g00685 803 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Phco8g00685 803 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Phco8g00685 803 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Phco8g00685 803 ProSiteProfiles Trp-Asp (WD) repeats profile. 540 574 IPR001680 GO:0005515
Phco8g00685 803 Gene3D - 19 160 IPR036908 -
Phco8g00685 803 SMART dpbb_1 69 155 IPR007112 -
Phco8g00685 803 SMART WD40_4 609 648 IPR001680 GO:0005515
Phco8g00685 803 SMART WD40_4 568 605 IPR001680 GO:0005515
Phco8g00685 803 SMART WD40_4 651 693 IPR001680 GO:0005515
Phco8g00685 803 SMART WD40_4 739 778 IPR001680 GO:0005515
Phco8g00685 803 SMART WD40_4 481 522 IPR001680 GO:0005515
Phco8g00685 803 SMART WD40_4 525 565 IPR001680 GO:0005515
Phco8g00685 803 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 255 IPR007117 -
Phco8g00685 803 SUPERFAMILY Barwin-like endoglucanases 33 183 IPR036908 -
Phco8g00685 803 Pfam Anaphase-promoting complex subunit 4 WD40 domain 536 589 IPR024977 -
Phco8g00685 803 FunFam FIZZY-related 2 isoform 1 481 781 - -
Phco8g00685 803 Gene3D - 474 783 IPR015943 GO:0005515
Phco8g00685 803 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Phco8g00685 803 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Phco8g00685 803 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Phco8g00685 803 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Phco8g00685 803 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Phco8g00685 803 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Phco8g00685 803 SUPERFAMILY WD40 repeat-like 494 779 IPR036322 GO:0005515
Phco8g00685 803 SUPERFAMILY PHL pollen allergen 163 255 IPR036749 -
Phco8g00685 803 Gene3D - 165 259 IPR036749 -
Phco8g00685 803 Pfam Lytic transglycolase 69 155 IPR009009 -
Phco8g00685 803 ProSitePatterns Trp-Asp (WD) repeats signature. 765 779 IPR019775 -
Phco8g00685 803 MobiDBLite consensus disorder prediction 784 803 - -
Phco8g00685 803 Pfam Expansin C-terminal domain 167 244 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00685 Phco-Chr8 6896862 6907933 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00685 8 6896862 6907933 Phco8g00685 8 6896862 6907933 ECH
Phco8g00685 8 6896862 6907933 Phco4g00368 4 2417087 2418200 PCT