Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00368 ATGGCTTCAACTCTTCAAGCTTCTACCTTGTTGTTTGTTTTTACATTGAAGTTCATGTTCATGGGAGACCAAGCAATAGCTGCGGGGATATTTCGACCCAGCCAATGGGCTCTTGCCCATGCCACCTTTTACGGTGATGAAACTGCTTCTGCCACTATGGGAGGAGCATGCGGGTACGGGAATTTATTTCAAAATGGTTACGGCACAGATACGGCGGCTTTAAGTTCTACGTTGTTCAACAATGGCTACGCGTGTGGAACTTGTTATCAAATAAAATGTTACCAATCAAGTGCTTGTTATAAGAATGTAGCTTTTACCACAGTGACTGCCACCAATCTTTGCCCTCCTAACTGGGCACAACCCTCCAATAACGGAGGGTGGTGCAACCCACCACGAGTGCATTTTGACATGGCCAAACCAGCTTTCATGAAAATTGCGCAGTGGAAAGCTGGAATCGTCCCTGTTATGTACCGCAGAGTGCCATGTGTAAGGAAGGGAGGGCTTCGATTCAGTTTTCAAGGAAATGGGTACTGGCTTTTGGTGTACATGATGAACGTGGGAGGTGGAGGAGATATTTCAAGCATGTCGGTGAGAGGAAGCAGAACTGGATGGATCAGCATGAGCCACAACTGGGGTGCTTCATATCAAGCATTTGCAACTCTTGGTGGCCAACCTCTTTCTTTCAGGATTACTTCATACACCACCAAGGAAACTATCATTGCATGGAATGTTGCTCCTTCAAACTGGAACGTGGGACTAACTTATTCCACCACAGTTAACTTCCGCTAA 789 0.4613 MASTLQASTLLFVFTLKFMFMGDQAIAAGIFRPSQWALAHATFYGDETASATMGGACGYGNLFQNGYGTDTAALSSTLFNNGYACGTCYQIKCYQSSACYKNVAFTTVTATNLCPPNWAQPSNNGGWCNPPRVHFDMAKPAFMKIAQWKAGIVPVMYRRVPCVRKGGLRFSFQGNGYWLLVYMMNVGGGGDISSMSVRGSRTGWISMSHNWGASYQAFATLGGQPLSFRITSYTTKETIIAWNVAPSNWNVGLTYSTTVNFR 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00368 262 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Phco4g00368 262 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Phco4g00368 262 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Phco4g00368 262 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Phco4g00368 262 PRINTS Expansin signature 243 259 IPR002963 GO:0009664
Phco4g00368 262 PRINTS Expansin signature 66 80 IPR002963 GO:0009664
Phco4g00368 262 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Phco4g00368 262 SUPERFAMILY Barwin-like endoglucanases 35 185 IPR036908 -
Phco4g00368 262 CDD DPBB_EXPA_N 35 162 - -
Phco4g00368 262 Gene3D - 24 162 IPR036908 -
Phco4g00368 262 Gene3D - 168 262 IPR036749 -
Phco4g00368 262 Pfam Lytic transglycolase 71 157 IPR009009 -
Phco4g00368 262 PANTHER EXPANSIN-A15 13 257 IPR002963 GO:0009664
Phco4g00368 262 SMART dpbb_1 71 157 IPR007112 -
Phco4g00368 262 Pfam Expansin C-terminal domain 169 246 IPR007117 -
Phco4g00368 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 167 IPR007112 -
Phco4g00368 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 257 IPR007117 -
Phco4g00368 262 SUPERFAMILY PHL pollen allergen 164 256 IPR036749 -
Phco4g00368 262 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Phco4g00368 262 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Phco4g00368 262 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Phco4g00368 262 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Phco4g00368 262 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Phco4g00368 262 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00368 Phco-Chr4 2417087 2418200 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00368 4 2417087 2418200 Phco4g00368 4 2417087 2418200 ECH
Phco8g00685 8 6896862 6907933 Phco4g00368 4 2417087 2418200 PCT