Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00679 ATGAATGGCAAGACCGCTCTCTCTACCTTCAAACTTTCCGACGGACCGCGACTAACTGTGATGGCAAAGAATGTGGGGATTCTCGCTATTGACATCTACTTCCCGCCTACCTGTATTCAACAGGAAGTGCTGGAGGCTCATGATGGTGCCAGTAAAGGGAAATATACTATTGGACTTGGTCAAGATTGCATGGCGTTTTGTACAGAAGTAGAAGATGTCGTTTCGATGAGTTTGACAGTAGTTTCTTCCCTTCTAGAGAAGTACGGGATAGATCCTAAACAAATTGGTCGGCTGGAAGTAGGTAGTGAGACTGTGATTGACAAAAGCAAATCCATCAAAACTTTCATAATGCAGATCTTTGAGAAATATGGAAATACCGATATCGAGGGTGTTGATTCAACAAATGCCTGCTATGGAGGAACTGCTGCTTTATTCAATTGTGTCAATTGGGTGGAGAGCAGCTCATGGGATGGGCGCTATGGACTTGTTGTTTGCACAGACAGCGCTGTATATGCTGAAGGACCTGCTCGGCCTACTGGTGGAGCTGCCGCTGTTGCCATGCTAATTGGTCCTGATGCTCCCATTGCTTTTGAAAGCAAATTGAGGGGAAGTCATATGGCTCATGCCTATGACTTTTACAAGCCTAATCTTGCCAGCGAATATCCAGTTGTTGATGGAAAGCTTTCTCAAACTTGTTACCTTATGGCCCTTGATTCTTGCTATAATCACTTAAGTCATAAATATGAGAAACTAGAGGGGAAACAATTTTCTATTTCTGATGCTGAATACTTTGTATTTCACTCTCCATATAACAAGCTTGTACAGAAAAGTTTTGCTCGTTTGGTGTTCAATGACTTCTTGAAAAATCCCAGTTCTGTGGATGAGATTGCCAAAGAAAAGCTGGAACCTTTTGCAACATTATCTGGTGATGAGAGCTATCAAAGTCGGGATCTAGAAAAGGCATCCCAGCAAGTTGCCAAGCCTCAATTCGATGTAAAGGTGCAACCAACCACCTTGATACCAAAACAAGTCGGCAACATGTACACCGCATCTCTTTACGCCGCATTTATTTCACTTATTCACGACAAGCATAGCACATTGGATAGTAAGAGGGTAATATTGTTCTCGTATGGAAGTGGCTTAACTTCCACAATGTTCTCCTTGCAACTACATGAAGGTCAATCTCCATTTAGCTTGTCAAACATTGTCAAAGTGATGGATGTTGCTGGAAAATTGAAGTCAAGGCATGAGTTTCCACCAGAGAAATTTGTTGAAACCATGAACCTAATGGAACATAGGTATGGTGCCAAGGAGTTTGTAACAAGCAAGGACACCAGCCTTTTACCTCCGGGCACATTCTATCTCACTGAAGTTGACTCTATGTATAGGAGATTCTATGCTAAGAAAAGTAGTGAAAATGATTTGGTCACCAATGGTCACTGA 1443 0.4227 MNGKTALSTFKLSDGPRLTVMAKNVGILAIDIYFPPTCIQQEVLEAHDGASKGKYTIGLGQDCMAFCTEVEDVVSMSLTVVSSLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFIMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLRGSHMAHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYNHLSHKYEKLEGKQFSISDAEYFVFHSPYNKLVQKSFARLVFNDFLKNPSSVDEIAKEKLEPFATLSGDESYQSRDLEKASQQVAKPQFDVKVQPTTLIPKQVGNMYTASLYAAFISLIHDKHSTLDSKRVILFSYGSGLTSTMFSLQLHEGQSPFSLSNIVKVMDVAGKLKSRHEFPPEKFVETMNLMEHRYGAKEFVTSKDTSLLPPGTFYLTEVDSMYRRFYAKKSSENDLVTNGH 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00679 480 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 125 140 IPR000590 GO:0004421|GO:0008299
Phco8g00679 480 SUPERFAMILY Thiolase-like 195 467 IPR016039 GO:0016746
Phco8g00679 480 Gene3D - 20 471 IPR016039 GO:0016746
Phco8g00679 480 FunFam 3-hydroxy-3-methylglutaryl coenzyme A synthase 20 470 - -
Phco8g00679 480 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 21 469 - -
Phco8g00679 480 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 195 469 IPR013746 GO:0004421|GO:0006084|GO:0010142
Phco8g00679 480 NCBIfam hydroxymethylglutaryl-CoA synthase 22 469 IPR010122 GO:0004421|GO:0008299
Phco8g00679 480 CDD init_cond_enzymes 24 388 - -
Phco8g00679 480 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 22 194 IPR013528 -
Phco8g00679 480 SUPERFAMILY Thiolase-like 24 192 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00679 Phco-Chr8 6801090 6805638 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00679 8 6801090 6805638 Phco8g00679 8 6801090 6805638 ECH
Phco8g00679 8 6801090 6805638 Phco4g00361 4 2345902 2351410 PCT