Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00674 ATGAACCTTCTCAAACAATCATCAGACGAGTCAAACAACGGCTGCTACGTTTGCTCCTCCCCAGAAACAACCTCCTCTAACCCTCCCAACGCCGTTCACTCCGACGAGGAACTACATGCATTAGCATCGGCGCGCCCCAAGAAACGTGCTGGGCGCCGAATCTTTAAGGAGACACGCCACCCCGTGTACCGAGGGGTGCGACAGAGGAACAACAACAAGTGGGTCTGCGAGATGCGTGTCCCCAATGACAAATCCACAAGGATTTGGCTCGGAACGTACCCAACCCCCGAGATGGCCGCACGTGCGCACGACGTTGCCGCGCTCGCGCTCCGAGGAAAGTCCGCTTGCCTCAACTTCGCCGACTCGGCGTGGCGGCTGCCCTTGCCGGCGTCGACAAATGCAAAGGAGATACGGCGAGTGGCGGGGGCTGCTGTTGTGGCGATTGCAGCGGAAGACAGGTGCGTCGAGCAATTAGAGAACGAGAATGTGAATGCCGTGGCTGACTGCGAAGTTAGCAGCGGTGGTCTCAGTGTTGATGAAGATGCCAGTATTAGCAAAGCCTTGCGGGTGTTTTGTGATTTGGATGAGATAACAATACCAGACGCATCAGGATTTGAAGAAATGCATGTGTGGCTTCAGAGTATGGCGGATAAGCCTTTGAGATCGCCTACTTTTGTAACATATGTTAGGGACTGGATCAGTGTTGAGGATGATGCTGAAGTTTCTCTCTGGAGCTTCTCCATCTGA 747 0.5422 MNLLKQSSDESNNGCYVCSSPETTSSNPPNAVHSDEELHALASARPKKRAGRRIFKETRHPVYRGVRQRNNNKWVCEMRVPNDKSTRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSAWRLPLPASTNAKEIRRVAGAAVVAIAAEDRCVEQLENENVNAVADCEVSSGGLSVDEDASISKALRVFCDLDEITIPDASGFEEMHVWLQSMADKPLRSPTFVTYVRDWISVEDDAEVSLWSFSI 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00674 248 SUPERFAMILY DNA-binding domain 62 122 IPR016177 GO:0003677
Phco8g00674 248 ProSiteProfiles AP2/ERF domain profile. 62 120 IPR001471 GO:0003700|GO:0006355
Phco8g00674 248 MobiDBLite consensus disorder prediction 1 33 - -
Phco8g00674 248 FunFam Ethylene-responsive transcription factor 2 61 121 - -
Phco8g00674 248 MobiDBLite consensus disorder prediction 1 32 - -
Phco8g00674 248 CDD AP2 63 122 IPR001471 GO:0003700|GO:0006355
Phco8g00674 248 Pfam AP2 domain 61 112 IPR001471 GO:0003700|GO:0006355
Phco8g00674 248 Gene3D AP2/ERF domain 62 121 IPR036955 GO:0003700|GO:0006355
Phco8g00674 248 SMART rav1_2 62 126 IPR001471 GO:0003700|GO:0006355
Phco8g00674 248 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Phco8g00674 248 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Phco8g00674 248 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 18 246 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00674 Phco-Chr8 6752888 6753634 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco8g00674 AP2 1.1e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00674 8 6752888 6753634 Phco8g00674 8 6752888 6753634 ECH
Phco8g00674 8 6752888 6753634 Phco4g00358 4 2293649 2294299 PCT