Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00358 ATGAAGATTTTCACATCTACACACGACCACGACTCAGAAGCATCATGCGAAACAGGCTCCCCGACAAGAGTGCAGAGTAGTGGGTACTCAGACGAGGAAGTGATACTAGCGTCGTCGCGGCCCAAGAAGCGAGCGGGGCGAAGAGTGTTCAAGGAGACCAGGCACCCCGTGTACCGGGGAGTGCGACGGAGGAATAACAACAGGTGGGTCTGCGAGATGCGAGTTCCCAACAACAACTCGCGGATTTGGCTCGGCACCTACCGCACGCCCGAAATGGCGGCGAGGGCGCACGACGTTGCGGCCCTCGCGTTCAGGGGGAAGTCGGCCTGCCTCAATTTCGCCGACTCCGCGTGGCGCCTCACGGTGCCTGACACCACCGACGCGGAGGAGATACGGCGAGCGGCTTTGGAGGCTGCTGAGGCATTTGTGGCTGAGGATGTGAACCAACAGCAGAGGAGTGAAGAAATTGAAGAGCCCCTGCGGCTGCATCAAGAAGAGGGGATGTCAGAAGGTGAAGAGTTGCATGAATTGCTTCTGCGAATTGCGAATGAGCCTTTGATGTCTCCTCCTCCTTGTGTGAGAGATGGTAGTGACTGGAATAATGCGGAGATATTTGATGCTGAGGTTTCACTGTGGAACTTTTCAATTTGA 651 0.5607 MKIFTSTHDHDSEASCETGSPTRVQSSGYSDEEVILASSRPKKRAGRRVFKETRHPVYRGVRRRNNNRWVCEMRVPNNNSRIWLGTYRTPEMAARAHDVAALAFRGKSACLNFADSAWRLTVPDTTDAEEIRRAALEAAEAFVAEDVNQQQRSEEIEEPLRLHQEEGMSEGEELHELLLRIANEPLMSPPPCVRDGSDWNNAEIFDAEVSLWNFSI 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00358 216 CDD AP2 58 116 IPR001471 GO:0003700|GO:0006355
Phco4g00358 216 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Phco4g00358 216 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Phco4g00358 216 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 213 IPR045277 GO:0003700
Phco4g00358 216 MobiDBLite consensus disorder prediction 17 33 - -
Phco4g00358 216 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Phco4g00358 216 SUPERFAMILY DNA-binding domain 57 116 IPR016177 GO:0003677
Phco4g00358 216 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Phco4g00358 216 MobiDBLite consensus disorder prediction 1 16 - -
Phco4g00358 216 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
Phco4g00358 216 MobiDBLite consensus disorder prediction 1 44 - -
Phco4g00358 216 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00358 Phco-Chr4 2293649 2294299 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco4g00358 AP2 8.8e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00358 4 2293649 2294299 Phco4g00358 4 2293649 2294299 ECH
Phco8g00674 8 6752888 6753634 Phco4g00358 4 2293649 2294299 PCT