Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00672 ATGGCTTCATCGTCATCTTCATCAAAGAGACATCCACTGTACCATGGAATCCGTTGCCGCGGAGGAAAATGGGTCACTGAAATCCGTGAGCCACGTAAGACCAACCGAATATGGTTGGGCACGTTCCTCACGCCGGAGATGGCCGCCGCCGCCTATGACGTGGCGGCGTTGGCCCTGAAAGGGGGGGAGGCGGTTCTCAACTTCCCGGACTCAATTGGCAAGTATCCAGTTCCCGCGTCCAAATCCCCTGCGGACATCCGCACCGCAGCCATTGCTGCAGCCGAACTCATGAAGCCTGAAGCCAGCCACTACAACGCTAATGCAGCAGCTCAGTCTGATAACACAGAGGGTGATGGTGACTATAACGTTGCTGCTCCTTTGCATGAAACTGAGTTTGTCGACGAGGAAGCCATATTCTCCATGCCGAGTTTGTTGATCGACATGGCTGAGGGAATGTTGCTAACCCCTCCCAGAATGAGCTCACCCTCTGATTACTGGACTGAAAATTCTGGTGGAGAAAATTTGTGGAACTTTTGA 537 0.5307 MASSSSSSKRHPLYHGIRCRGGKWVTEIREPRKTNRIWLGTFLTPEMAAAAYDVAALALKGGEAVLNFPDSIGKYPVPASKSPADIRTAAIAAAELMKPEASHYNANAAAQSDNTEGDGDYNVAAPLHETEFVDEEAIFSMPSLLIDMAEGMLLTPPRMSSPSDYWTENSGGENLWNF 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00672 178 SMART rav1_2 13 77 IPR001471 GO:0003700|GO:0006355
Phco8g00672 178 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Phco8g00672 178 SUPERFAMILY DNA-binding domain 13 71 IPR016177 GO:0003677
Phco8g00672 178 Pfam AP2 domain 14 61 IPR001471 GO:0003700|GO:0006355
Phco8g00672 178 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 165 IPR045277 GO:0003700
Phco8g00672 178 ProSiteProfiles AP2/ERF domain profile. 13 69 IPR001471 GO:0003700|GO:0006355
Phco8g00672 178 Gene3D AP2/ERF domain 13 70 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00672 Phco-Chr8 6735966 6736502 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco8g00672 AP2 2.2e-08 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00672 8 6735966 6736502 Phco8g00672 8 6735966 6736502 ECH
Phco8g00672 8 6735966 6736502 Phco4g00357 4 2282115 2282618 PCT