Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00671 ATGCCCTCTACTTTCTGTGAAAGGAATGAGGGCCACCCAAACGTATCGAATTCCCCATTACAGGATGAGACCAACATGTTCACCACTTTGATCCCCAAATCCCCAACATGTCAACACCATCATCACCAAACACAAAATCCCCACAAAACCCATTTGTCTCTGGCCCTCAGCGAAGCCAAGTGCATTTCCAATATATCCTTCTCCATGATCCTAACTGGCCTATTACTCTATTCCCGCTCCATGATCTCCATGCTCTTCCTCGGCCACCTCGGAGAACTCGCTCTCGCAGGTGGCTCCTTGGCCATCGGATTCGCCAACATCACTGGCTACTCTGTTCTCTCTGGCCTCGCCATGGGAATGGAACCCATCTGCGGGCAGGCCTTCGGAGCCAAAAGGTTCAAACTTCTCGGCCTCACCATGCAGAGATCCGTGCTCCTTCTTCTCCTAACTTCACTTTTCATCTCATTCTTCTGGCTCAACATCAAGAAACTATTACTCCTGTGTGGCCAAGAAGAAGACATAGCCAACGAGGCACAATTCTATATATATTACACTCTCCCAGATCTTATATTACAATCGCTGCTGCACCCTCTAAGAATCTATCTTCGAAGCCAATCAATAACTCTTCCTCTCACGTGCATCGCCGCTCTCTCCATTATCCTCCACGTGCCTATCAACTACCTCTTTGTCTCCGTCCTCAATCTCGGAATCCGAGGCATCGCGATAAGCGCTGTTGTCACAAACTTCAACCTCGTCGCGTCCTTGGTTATTTATGTTGTGGTATCAGGCACGCATAAGAAAACGTGGCCGGGTATTTCCTGGTCGTGCTTCAAGGGGTGGAAAAGGCTCTTGAATCTCGCGATTCCGAGTTGCGTTTCGGTTTGTCTGGAATGGTGGTGGTACGAGATAATGATTTTACTGTGCGGGTTGTTAGTGAACCCTCATGCAAGTGTTGCCTCCATGGGGGTTTTGATTCAAACTACGGCTTTGATATACATTTTTCCGTCGTCTTTAAGTTTTGGAGTGTCAACGCGTGTTGGAAACGAGTTGGGTGCGGGGAATCCTGAGAGGGCGAGAATTGCGGCGATTGTGGGACTCTGTTTCAGTTTCGTGTTGGGGTTCTCTGCTTTGGTGTTCGCGATTTCGGTGAGAAAGGTTTGGGCGACGATGTTCACAGGGGATGGAGAAATCCTTGCTTTGACGTCGATGGTGTTGCCTATCATTGGGCTTTGCGAGCTCGGGAACTGTCCCCAAACGACGGTTTGCGGCGTTTTGAGGGGGACGGCTCGGCCGAAATTGGGGGCGAACATAAACTTGGGTTGCTTCTACCTTGTGGGCATGCCCGTTGCGGTGTGGTTGGGGTTCTTTGCAGGGTTTGACTTCAAAGGATTGTGGCTGGGGATGTTGGCGGCGCAAGGGTCTTGTATGATCACAATGATGTTCGTGTTGGCGCGGACCAATTGGGAGGGTCAAGCTTTGAGAGCTAAGGAACTCACTTCATGTGATTCTAACGAGGAGGAAAAACAAGTGGACGAGGAAGAACAAGAGAAAGAGGAGAAAGGTTTTTTGGGATCATCTGCCACCAAACAACCCTCTGATTTAGTTGTTTGA 1611 0.4947 MPSTFCERNEGHPNVSNSPLQDETNMFTTLIPKSPTCQHHHHQTQNPHKTHLSLALSEAKCISNISFSMILTGLLLYSRSMISMLFLGHLGELALAGGSLAIGFANITGYSVLSGLAMGMEPICGQAFGAKRFKLLGLTMQRSVLLLLLTSLFISFFWLNIKKLLLLCGQEEDIANEAQFYIYYTLPDLILQSLLHPLRIYLRSQSITLPLTCIAALSIILHVPINYLFVSVLNLGIRGIAISAVVTNFNLVASLVIYVVVSGTHKKTWPGISWSCFKGWKRLLNLAIPSCVSVCLEWWWYEIMILLCGLLVNPHASVASMGVLIQTTALIYIFPSSLSFGVSTRVGNELGAGNPERARIAAIVGLCFSFVLGFSALVFAISVRKVWATMFTGDGEILALTSMVLPIIGLCELGNCPQTTVCGVLRGTARPKLGANINLGCFYLVGMPVAVWLGFFAGFDFKGLWLGMLAAQGSCMITMMFVLARTNWEGQALRAKELTSCDSNEEEKQVDEEEQEKEEKGFLGSSATKQPSDLVV 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00671 536 MobiDBLite consensus disorder prediction 1 21 - -
Phco8g00671 536 NCBIfam MATE family efflux transporter 70 465 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco8g00671 536 CDD MATE_eukaryotic 58 492 IPR045069 GO:0042910|GO:1990961
Phco8g00671 536 PANTHER MULTIDRUG RESISTANCE PROTEIN 55 488 - -
Phco8g00671 536 Pfam MatE 69 228 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco8g00671 536 Pfam MatE 289 452 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco8g00671 536 Coils Coil 496 516 - -
Phco8g00671 536 MobiDBLite consensus disorder prediction 499 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00671 Phco-Chr8 6709826 6711436 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00671 8 6709826 6711436 Phco8g00671 8 6709826 6711436 ECH
Phco8g00671 8 6709826 6711436 Phco4g00352 4 2241253 2242851 PCT