Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00646 ATGAACAACATCAACAATCCAGCAAAAAATGCTGCAACGCCGTCGTTTTTCGCCAACCCGGGTGCACCCTCGATCCCCATGAACCACCCATCACCCCACCTTCTCTCACAGGCGCAGCCTCAACCACAAGCTGGTGCCTCTCACTTCCATGGCCACTTTCAGCTCTCGCAACCCCAAACCCACGTCCTCGCACAGCCACACCCTATTCCTCACCCGCAGGTGCACAACAATTCTAACACCAATGCCAACGTCGCAACACCTGCGCCTCCCAAGCGTGCAAATCACAAACCCCCTTCACGCCCTCCCGGTTCCTCCAACGCCACCCAGTCCTCTGCCTTCAAGACCATGGAACTTACCCTGGCGCCTCCTCGGAAAAAGAGAAGCTTTCCCGAGAAGCTCATTCCCGACAAGGTGGCCAAGCTTGTGCCTGAGTCTGCTATTTATGCAAAGTTGCTTGAACTTGAGGCTCATATAGATTCTGTATTGGTTAGGAAGAAAATTGATGTGCAGGAGAATGTTAGAAACCCTCGCTGTGTTAGGAGAACACTTAGGATTTATGTGTATAATACTTTTTCGAAACAGGTAAAAGTGGAACCTGGGAAGATTGATGTGGAGGAGCTTTCTTGGGTTCTCAGGATAACAGGAAGGGTGTTGGAAGATGGTAAGGATCCAGTGGCAGATGGAGTTTTGCCTAAGGAAAATCCAAAATTCTCGGCTTTCTTCAAGAAGATTACCATTTACTTGGATCAGGGATTCTATCCGGATAACCATGTTGTTGTGTGGGATAGTGCCCGTTCGGCTGCGCAGCGGGATGGTTTTGAGGTGAAGAGGAAAGGAGATAAGGAATTCACTGCGGTTGTTAGAATGTCAATGAATTATTCGCCTGACAAGTTTGTGGTTTCAGCTCAGCTGGCTAGAGTGTTAGGGGTTGAGTTTGACTCGCGCTCTAGGATCATTGCTGCTCTTTGGCATTATGTGAAGGCTAAGAAGCTGCAGAGTCCGAATGACCCTTCGTTCTTCATGTGTGATGCTTCTCTCCAAAGGGTGTTTGGGGAGGAGAAGATGAAATTTTCTGTGGCTTCGCAGAAGATATCACAGCATTTGTCACCTCCGCAGCCTATACACCTGGAGCATAAAATCAAGCTTTCGGGAAATTGTCCAGCCGGAGCTACGTGTTATGATGTGCAGGTTGATGTGCCTCTTCCACTAGAGAAGGATATGTCTTCATTCTTGGCAAGCACTGAGAAGCACAAAGAGATTGATGTTTTTGATAAACTGATCTGCGATTCCATAAAGAAGATCCATGAACATCATAGGAGACGGGCATTCTTTCTCGGCTTTAGTCAGTCCCCAGCAGACTTTATTAATGCTTTGATAGCTTCTCAGAGCAAGGATCTGAAGCTTGTTGCTGGAGATGTTAGCCATAATGTTGAGAATGAACGACGTTCTGAATTCTACAATCAACCATGGGTTGAGGATGCTGTCGTTCGCTACTTGACCCGGAAAAATGCTCGAAGTGATGCTCCTGGAAACATTTGA 1539 0.4756 MNNINNPAKNAATPSFFANPGAPSIPMNHPSPHLLSQAQPQPQAGASHFHGHFQLSQPQTHVLAQPHPIPHPQVHNNSNTNANVATPAPPKRANHKPPSRPPGSSNATQSSAFKTMELTLAPPRKKRSFPEKLIPDKVAKLVPESAIYAKLLELEAHIDSVLVRKKIDVQENVRNPRCVRRTLRIYVYNTFSKQVKVEPGKIDVEELSWVLRITGRVLEDGKDPVADGVLPKENPKFSAFFKKITIYLDQGFYPDNHVVVWDSARSAAQRDGFEVKRKGDKEFTAVVRMSMNYSPDKFVVSAQLARVLGVEFDSRSRIIAALWHYVKAKKLQSPNDPSFFMCDASLQRVFGEEKMKFSVASQKISQHLSPPQPIHLEHKIKLSGNCPAGATCYDVQVDVPLPLEKDMSSFLASTEKHKEIDVFDKLICDSIKKIHEHHRRRAFFLGFSQSPADFINALIASQSKDLKLVAGDVSHNVENERRSEFYNQPWVEDAVVRYLTRKNARSDAPGNI 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00646 512 SMART swib_2 294 373 IPR019835 -
Phco8g00646 512 MobiDBLite consensus disorder prediction 71 87 - -
Phco8g00646 512 MobiDBLite consensus disorder prediction 1 113 - -
Phco8g00646 512 CDD SWIB_like 300 368 - -
Phco8g00646 512 MobiDBLite consensus disorder prediction 99 113 - -
Phco8g00646 512 MobiDBLite consensus disorder prediction 30 63 - -
Phco8g00646 512 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 113 467 - -
Phco8g00646 512 SUPERFAMILY SWIB/MDM2 domain 289 378 IPR036885 -
Phco8g00646 512 ProSiteProfiles SWIB/MDM2 domain profile. 293 370 IPR003121 -
Phco8g00646 512 Pfam SWIB/MDM2 domain 297 368 IPR003121 -
Phco8g00646 512 Gene3D SWIB/MDM2 domain 290 375 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00646 Phco-Chr8 6448040 6450804 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Phco8g00646 SWIB 6.2e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00646 8 6448040 6450804 Phco7g01975 7 33504028 33506032 ECH
Phco8g00646 8 6448040 6450804 Phco8g00646 8 6448040 6450804 ECH
Phco8g00646 8 6448040 6450804 Phco7g01975 7 33504028 33506032 PCT