Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01975 ATGAATAATCAAGCAAAGAATGTGGCTGCATCATCTTTGTTTGGTCATTCTGGAATGGCCACACAACCACACCACCCTAACCCCATTCAGCAATGGAACCATTCAATTCCAACCCCTTTACACTCTCAATCACAATCACAGTCTCAGCCACATCCTCAGACACAATTCCCTGGTCTCTTTCAGTTTTCAGAGCCCCAATCTCATGTGCTTGCTCAAGCTCAGTATGCACAGACACAATTGCAATCTCAGGCTTCACGTGCTCATCCACAACCTCAAACTCACCCTTTTACCCACCTGCATAGTTTAAATACTAATGCTTCTAATGGCACATCATCCTCGACCACCGGAAATGCCAAGCGACCAACCCCAAAGCCCCTGTTGAGGTCTCATAATTCATCCAATACGAACCAATCCACGCAGGGTGCTCGGCAGCAAAAGAAGCAATCACCAGAGAAGGGGGCTATGTTTTTGCCTGAGTCTGCTCTGTATACTCAATTACTTGATTTTGAGGCTCAGGTGGATACTGCTTTGGCCAGGAGAAAGTTTGATATACAGGAGGCTAGGCTCCTTCCCCATGTTCAGAAAACTCTTCGTGTTTATGTGTTCAATACCTTCTCAAATCATGCCAAAATGGATTCTGAGAATAAGAAGGCCAATGAATCTTCGTGGTCTCTCAAGATAACTGGAAGGATATTGGAAGATGGTATGGATTCCATGTCTGGAATTTCACAGAGATCGAGTCCTTCATACCCAAAGTTCTCTGCATTTTTCAAGAAAATTACCATACATTTGGATCAAAGCATTTATCCTGATAATCATGTCATTGTATGGGATAGCGCTCGTTCACCTACCCAACAAGATGGTTTTGAGGTGAAGAGGAAAGGAAACAAAGAATTTACTGCAGTGATTGCAATAGAAATGAATTATACACCTGACAAGTTTATGGTTTCATCACAACTGTCTAAACTCTTAGGTATTGAGGTTGAGACTCGTCCAAGAATAATAGCTTCTCTTTTTAACTACGTGAAGTCCAGGAAGCTACAGAGCCCAAATGACCCTTCGTCTTTCATATGTGATCCTTCTCTACAAAGGGTGTTTGGGGAAGAGAAGATGGATTTCACCATGGTTTTTCAGAAGTTAGCACAACATTTGTCACAGCCACAACCAATACATCTGGAGCATAACATCAAGCTTTCTGAATATGCTCCAGCTGTATCTGCATGTTATGATATACAGGTTGCTGTGCCTTTTTCACTGGAAAAAGACAAGTCCACATTCTTGTCAAGCCTTGAGAGCCAAAAGGAGATTGAAGCTTATGATGAAGCTATTTGTGTTTCCTTAAAGAAGATCAAAGAGCATCGGAGAAGACGGGCTTTTTTTCTTAGTTTTAGTCAGTCTCCTGTAGAGTTTATTGATACTTTGATTACTTCTCAAAGCAAGGATTTGAAACTTGTTGCTGGAGATGCCAGGCATAACATTGAAAAGGAACTTCGATCTGAATTCTACAATCAACCATGGGTTGAGGATGCTGCCATTCGTTACTTGAACCGCAAAACTGCAGGAATTGATGCTCTTGGACGCAACTAA 1587 0.4197 MNNQAKNVAASSLFGHSGMATQPHHPNPIQQWNHSIPTPLHSQSQSQSQPHPQTQFPGLFQFSEPQSHVLAQAQYAQTQLQSQASRAHPQPQTHPFTHLHSLNTNASNGTSSSTTGNAKRPTPKPLLRSHNSSNTNQSTQGARQQKKQSPEKGAMFLPESALYTQLLDFEAQVDTALARRKFDIQEARLLPHVQKTLRVYVFNTFSNHAKMDSENKKANESSWSLKITGRILEDGMDSMSGISQRSSPSYPKFSAFFKKITIHLDQSIYPDNHVIVWDSARSPTQQDGFEVKRKGNKEFTAVIAIEMNYTPDKFMVSSQLSKLLGIEVETRPRIIASLFNYVKSRKLQSPNDPSSFICDPSLQRVFGEEKMDFTMVFQKLAQHLSQPQPIHLEHNIKLSEYAPAVSACYDIQVAVPFSLEKDKSTFLSSLESQKEIEAYDEAICVSLKKIKEHRRRRAFFLSFSQSPVEFIDTLITSQSKDLKLVAGDARHNIEKELRSEFYNQPWVEDAAIRYLNRKTAGIDALGRN 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01975 528 SUPERFAMILY SWIB/MDM2 domain 305 394 IPR036885 -
Phco7g01975 528 MobiDBLite consensus disorder prediction 16 59 - -
Phco7g01975 528 Gene3D SWIB/MDM2 domain 306 391 IPR036885 -
Phco7g01975 528 CDD SWIB_like 316 384 - -
Phco7g01975 528 SMART swib_2 310 389 IPR019835 -
Phco7g01975 528 ProSiteProfiles SWIB/MDM2 domain profile. 309 386 IPR003121 -
Phco7g01975 528 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 133 483 - -
Phco7g01975 528 MobiDBLite consensus disorder prediction 75 147 - -
Phco7g01975 528 Pfam SWIB/MDM2 domain 313 384 IPR003121 -
Phco7g01975 528 MobiDBLite consensus disorder prediction 75 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01975 Phco-Chr7 33504028 33506032 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Phco7g01975 SWIB 1.3e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00646 8 6448040 6450804 Phco7g01975 7 33504028 33506032 ECH
Phco7g01975 7 33504028 33506032 Phco7g01975 7 33504028 33506032 ECH
Phco8g00646 8 6448040 6450804 Phco7g01975 7 33504028 33506032 PCT