Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00611 ATGCTATCCCCACTTTCTGTGAATACTGATTCATCATCACATTGCTCTGTCACACCACCTGCTTCTGCCATAAAGGGAACAAAACAACCTTCCCAAACCCAAAAGTTCTTTTCTTTTTCTCTTTCGTTGTACCCAGCTTTGTCGTTTCGCACGCATTTGATGGATGGGAGGAGACATTCTGTGGATATTCCTATTTCCAAAACTCTTGTGGCACTGAGGAGAGTAAGGTCACTGAGGGATCCATCAACTAATGGCGTTAGCACACTCTCTCCTTTGATTGATAATGGAGATTGGAATAATGGTTCTAGTAATGGGGTTTCCCTGAGTTTGAGATTTCTGAAAGCTTCTCATGCTGAAGATTTTGACGGTAATGGTTTTTCAAGATCAAACAGTTTAGACTTTAAGGGTCAGAGAGAGCAGGAAACTGCTAAGTTAGAATTGAAAATGTCGAACTCTAAGGTGAACTATTGTGGGATTTCATGTCAGGAAGGGCAACGAAATGAGGAACTTGTGTACTCTAATCCTATGCAGCAAGGTATTTCTGGAGATAAATCGCCGAATGAAAGCTGTTGTAGTAACCATAAAGGTGGAGGATTGGATTTGGTTGCCATCACGCCTCCATGTAATCATTTGACGGATGGGGAGTTATGCTATTTATCAACTGCATTGAGAGCAGATCACTCAAAGTCAGCTAGAAAATTACTACTCAAGAATCAAATGAAGCCATCTGGAGTAGTGGGTGACATGGCTAGCCCTGTAGGAAGTCAACAGTGCCTTTCTGTTTATGATTCTATCTCAGCTCATTGTGCCTTGGAACATGTCCCTCAAGATGTTGACGCTTTAGAAAATCACCATGGATGTGGATTAAGGAGTTGTTGGTCAAAGTCACCAAGGTTTAGAGAATCAAATCATTATTCTGAAACAGAAGGCCTTCCCTTGATATTGCATCACGCTAATGAAACGGACCTCAATGGACATAGAAACGTAAGACCCATTGGTGATGAAATTAGTCAAACTATGGAAACTCCAAGAAGTTTATCTGTGAAATTCAGGCCAAAATCTTTTGATGATTTGGTTGGACAAAATGTGATAGGTAAGTCTCTTTTGGGTGCTATCTGTAGAGGAAGGATAGCATCATTTTATCTCTTCCATGGTCCACGCGGCACGGGCAAGACCTCAGCCTCTAGGATATTTGCTGCTGCACTGAATTGCCTATCCTCTGTAGCGCAAAAGCCTTGTGGTCTGTGTAGAGAATGCGTTTTGTTCTTCTCTGGAAGAAATAAAAATGTTAATGAAGTGGATTCTTTGAGAATCAATCGTGCAGAGAAAATTAAATCCCTTGTTAAGCATGCATGCATTCCTCCAGTTTCCTCAAGTTTTAAAGTGGTCATTGTTGATGAGTGCCAGTTATTGCACGGGGAAACATGGGCGTGCCTTTTGAATAGTCTAGAGAACGTTTCTCCTCATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAACCTTCCTCGGAGTGCAGTTTCCCGGGCTCAGAGGTATCACTTTGCAAAGATTAAAGATGCTGACATTGTAAGAAGATTGGAAAAAATTTCTGTCGAAGAAGGTCTTGAATCTGAACAAGTTGCTTTGGACTTCATTGCTGCTAGATCCTGTGGTTCTCTTAGGGATGCAGAAACTATGCTTGATCAACTGAGTTTGCTTGGTAAAAGGATCACAATTTCCTTAGTCCACGAGCTTACTGGGGTAATTTCTGATGATGAATTGCTTGATTTGCTGGACCTAGCTTTATCATCTGACACTTCAAATACAGTTATAAGAGCCCGGGAACTTGTCAGAACAAGGATAGATCCTTTACAACTTATATCACAGTTGGCAAATCTTATTATGGACATTCTGTCTGGCAAATGTGAACTTCGTGGTTCTGAAATAAAAACAGGATTTTATAATAGATATACCTCGGAAGCTGACCTGCAGAAACTAAGTCATGCATTAAGAATACTGTCTGAATCAGAGAAGCAGTTAAGAATTTCCAAGAATCAAACAACATGGTTCACTGCAGCTCTTCTACAGTTGAGCTCCGTAGAAAATTCATCTGCAGATACAAATACTACGAAGTTGTGTACACGAGCTGCATCCATTAGAGATGGTGATATCTGCAGTACATCTCCTAAAGGGGACAGCTTGGAGCATCTTGCTACAACAGATCAATGTGGTGATAATTCATATAGGTTAGGAGTGCATGAGGATCACAAAAGAACATTGGATTCTATATGGTATAAAGCAACTGAGATGTGTCAATCTAGAAGGCTCAGAACATTTCTCAGGAAACAGGGGAAGTTGTGTTCAGTTTGTATTGGTCAAGGCCGTGCAGTTGCTGAGTTGGAGTTCCGGCATCGTGACTATGTAAGTAGGGCTGAGAAGTCATGGAAGTTGATTGCAAGTTCTCTGCAGTTCATATTAGGCTGTAACCTTGAGCTCAGAATCCATTATGTTCCTTCTTGTACTTCAGATTCTATGTATGCTAAATTGAAGAGGTCATCCTTCAATTTCTTTGGTTGTTCCCGTAGAATTCGTTGGAAATCTTTATCATATAATGAACAAGGAAGTGAATCAGACTATGCTGAATACACCTCTCAAAAGCCCATGATGAAGGATCAAACTCTAACTTGTTCCTCTGATTATGAACCCCTGGTGCCACCATTTGAGTCCTGCCATGGAATTGGAATGCAGGTCATAACAACTTTGAGAAGTAGCGAAGGAAATGTGTTAAGCTCAGGGAAAATGTTTATGAATAGATCAGATCAAGAGACTCCAAGAATTTCTTGTTCAAGAGTTGATTCTTGCATGGAAGAGGGATGCAATTATGAACACTTAGCTTCATCAACCCTTGATTTAGATAATCAGTCCGACTGTTTTCCTGGAACCCGCTGGCTTCATAAAAAGTTTGGTTCTTCTTATGCACCACAACAGAAGGATTTTGTTTTATCTATCCCCAAGTTAAAATGTTCTGAGATTTGTAGATATGATCTTGAACCCTGTGTCTTTTCTCACCGTTCTAAGAACTGCTCTCAAGCTTCTGAGGAGAAGTAG 3090 0.4061 MLSPLSVNTDSSSHCSVTPPASAIKGTKQPSQTQKFFSFSLSLYPALSFRTHLMDGRRHSVDIPISKTLVALRRVRSLRDPSTNGVSTLSPLIDNGDWNNGSSNGVSLSLRFLKASHAEDFDGNGFSRSNSLDFKGQREQETAKLELKMSNSKVNYCGISCQEGQRNEELVYSNPMQQGISGDKSPNESCCSNHKGGGLDLVAITPPCNHLTDGELCYLSTALRADHSKSARKLLLKNQMKPSGVVGDMASPVGSQQCLSVYDSISAHCALEHVPQDVDALENHHGCGLRSCWSKSPRFRESNHYSETEGLPLILHHANETDLNGHRNVRPIGDEISQTMETPRSLSVKFRPKSFDDLVGQNVIGKSLLGAICRGRIASFYLFHGPRGTGKTSASRIFAAALNCLSSVAQKPCGLCRECVLFFSGRNKNVNEVDSLRINRAEKIKSLVKHACIPPVSSSFKVVIVDECQLLHGETWACLLNSLENVSPHVVFVMITPDLDNLPRSAVSRAQRYHFAKIKDADIVRRLEKISVEEGLESEQVALDFIAARSCGSLRDAETMLDQLSLLGKRITISLVHELTGVISDDELLDLLDLALSSDTSNTVIRARELVRTRIDPLQLISQLANLIMDILSGKCELRGSEIKTGFYNRYTSEADLQKLSHALRILSESEKQLRISKNQTTWFTAALLQLSSVENSSADTNTTKLCTRAASIRDGDICSTSPKGDSLEHLATTDQCGDNSYRLGVHEDHKRTLDSIWYKATEMCQSRRLRTFLRKQGKLCSVCIGQGRAVAELEFRHRDYVSRAEKSWKLIASSLQFILGCNLELRIHYVPSCTSDSMYAKLKRSSFNFFGCSRRIRWKSLSYNEQGSESDYAEYTSQKPMMKDQTLTCSSDYEPLVPPFESCHGIGMQVITTLRSSEGNVLSSGKMFMNRSDQETPRISCSRVDSCMEEGCNYEHLASSTLDLDNQSDCFPGTRWLHKKFGSSYAPQQKDFVLSIPKLKCSEICRYDLEPCVFSHRSKNCSQASEEK 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00611 1029 Gene3D - 336 516 IPR027417 -
Phco8g00611 1029 FunFam DNA polymerase III subunit gamma/tau 519 581 - -
Phco8g00611 1029 SMART AAA_5 377 537 IPR003593 GO:0016887
Phco8g00611 1029 NCBIfam DNA polymerase III subunit gamma/tau 345 691 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Phco8g00611 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 568 IPR027417 -
Phco8g00611 1029 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 348 766 - -
Phco8g00611 1029 MobiDBLite consensus disorder prediction 1 29 - -
Phco8g00611 1029 SUPERFAMILY post-AAA+ oligomerization domain-like 588 689 IPR008921 GO:0003677|GO:0006260
Phco8g00611 1029 FunFam Protein STICHEL-like 1 isoform C 582 695 - -
Phco8g00611 1029 Gene3D - 519 581 - -
Phco8g00611 1029 Pfam DNA polymerase III, delta subunit 362 518 - -
Phco8g00611 1029 CDD HLD_clamp_pol_III_gamma_tau 518 581 IPR045085 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00611 Phco-Chr8 6143756 6148984 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00611 8 6143756 6148984 Phco8g00611 8 6143756 6148984 ECH
Phco8g00611 8 6143756 6148984 Phco7g02017 7 34575490 34579157 PCT