Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02017 ATGATGATGGAAGGGCGGCGTCATTCAGTTGATATTCCAATTTCGAAAACTCTTGTGGCACTGAGGAGAGTCAGGTCATTGAGGGATCCCTTAACTAATTCTATGAGCAAACTCTCTTCTTTGGTTGATAATGTGCACTGGGAAAACGGTTCTGGTAATGACATTTCCCTGCGGTTTTCTGATGCTGTACGGCCACGTGATTCTGATGATAATGCTGCTCTCAGATCAAGAATTTTAGGTTTCAAGGGACAATGGGAGCAGAATGATACTGATTCTGTATTCAACTCAAGGTTGAAGTCTAGTGGGATTTCTTGTCAGGGTGTCCAACAAGATGGTGAACTAGTTTACTCTAAGCGTAAAAGTGAAAGCTGTGGTAGCAACCATGGGGGTAAAGAATTGGACTTGGCTCGTATTGTGCTTCCAAGTAACAATGATTTCAAGGATGAGGACTCATGTTATATAGCAACTGCTAGATCATCTCAATTAGGGAGATTAGATTGCTCTAAGTCAGCAAAAAAGTCTCTGCGCAAGAATCAAGTAAAACCATCAGAGTTAGTAGGCAGTATTGATGATGGCAATGTTAGTCCATACCCTTCTGGTTATGATGCTTTCTCACCCTATAGTGGTTCAGTAGGTATAAATCAAGATATGGATGGTTTAGATAATAATGATAACGGGTGTGGAATAAGCTGCTGTTGGTCAAGATCACCAAGATTTAGAGAATCAAATCTATATGGTGAGATAGAAGACCGTCCTTTGATATCCCAGCGAGTTGATGAGTCAGATCTTCATGCACACAGAAGCACGAGACACAATGGTGGTGGGATTAGTATGAATTTGGAAACTCCTAGAAGTTTGTCCATGAAATTTAGGCCTAAATCATTTAGTGATTTGGTGGGACAAAATGTGGTAGTGAGGTCTTTGTTGGGGGCTATCTCCAGAGGAAGGATAACATCATTTTATCTCTTCTATGGTCCGCGTGGCACCGGCAAGACGTCTGCATCTAGGATATTTGCTGCTGCACTGAATTGCCTTTCTTTTGAGGAGCAGAGGCCATGTGGCCTATGCAGAGAATGTATTATATTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTGGATTCTGTGAGAATCAATCGCACCGACCAGGTTAAATCCCTTGTTAAGAGTTCAAGCATCCCTCCAGTATCCTCACGTTTCAAGGTTTTCATTGTAGATGAGTGCCAGCTATTGAACGGGGAGACATGGGCAAGCATTTCAAATAGCCTAGAGAACCTTTCTCAACATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCTCGGACTGTGGTTTCCCGTGCCCAGAGGTATCACTTTCCAAAGGTTAAAGACGCTGACATTGTATTCAGATTACAAAATATTTGCGCCGAAGAAGGTCTTGATTTTGAACAGGAAGCTTTGGACTTTATTGCTGCAAAATCCTGTGGGTCTGTTAGAGATGCAGAAATGATGCTTGATCAGATGAGTTTGCTTGGTAAAAAGATCAATATCTCTTTAGCTTATGAACTTACTGGGATCGTTTCTGATGATGAATTACTTGATTTGCTGGATCTAGCTTTTTCATCTGACACTTCAAATACAGTCATTAGAGCTCGGGAGCTGATGAGATCAAGGATAGATCCTTTGCAACTTGTATCACAACTAGCAAATCTCATTATGGACATACTTGCAGGGAAATGTGAAAATAGTGGTTCGGAAGTCAGAAGTAGATTTTACAGGAAATATACCTCGGAAGCTGATCTGCTGAAACTAAACAATGCATTGAAAATACTTTCTGAAACTGAGAAGCAGTTGAGAATTTCGAAGAATCAAACAACATGGTTCACCGTAGCTCTCCTACAGTTAAGCTCTGTAGATTATCAGTCTGTGGATGCAAATGACACCAAATTTAGTCTTAGAGGTGCATGCAATGGAGGTCAAAACTTGGAGCATTTTGCTACAGGCCTGTGTGCTAACAAGTCATACAGGTTAGAAGTGCCGGAGGATCACAAAGGAACATTGGATTCCATTTGGTATAAAGCCACTGAGATGTGTCATTCTAGTCAGCTCAAAACTTTTCTCAGGAAGAAGGGGAAGTTGTCGTCACTTCATGTTGATCGCAGTACAGCTTGTCTTGCTATTGCCGAGTTGGAGTTCCACCATAGTCACCATGTATCCAAGGCCGAGAAGTCATGGAAAATGATTGCAAGTTCCTTGCAATTCATATTGGGTTGCAATGTGGAGTTGAGGATCACTTATACACCTTGTGCTTCAGATTCGAAGTATTCCAAATTGAAGAGAACAACTTTCAGTATCTTCACTTGTTCCCGCAGAAATCGGCAACAGAAGTCAGCATCATCTAATGAACAAGGAAGTGAATCAGATTGTGGTGATTGCACCTCTGAAAATCCCATGATGAAGGACAAAACTTCTACCTCTGATTGTGGAATGGATGCTGTAACAGCTTTGAGGAGTCGTGAAGGAAATTTGCTGAGCTCAGGAGAAAGATTTTTTAATAGATCATTTCAAGAGAGTATGAGAACATCATGTGCTGAAGTGGATTCTTCCAAGGAAAAGGGATGCAACGGTGCTCATCTAGATCCATCAATTCTAGATTCAGATAATGATCACTTTAACTGTTTTCCTAAAACCCTTTGGCTTCAAAAGAAGTTCCGTTCTTCATATTCATCCAAGTTTACTTTTCAAGGCATTCAACAACAGAAAGATTTTGTTTTATCTGTCCCGAAGTGTACATGTTCTGGGACATATACATATGCTAATGAACCCTGCATTTTTTCCGGTAGTTGTAAGAATTGCACCAAAGCCTCTTAG 2859 0.4085 MMMEGRRHSVDIPISKTLVALRRVRSLRDPLTNSMSKLSSLVDNVHWENGSGNDISLRFSDAVRPRDSDDNAALRSRILGFKGQWEQNDTDSVFNSRLKSSGISCQGVQQDGELVYSKRKSESCGSNHGGKELDLARIVLPSNNDFKDEDSCYIATARSSQLGRLDCSKSAKKSLRKNQVKPSELVGSIDDGNVSPYPSGYDAFSPYSGSVGINQDMDGLDNNDNGCGISCCWSRSPRFRESNLYGEIEDRPLISQRVDESDLHAHRSTRHNGGGISMNLETPRSLSMKFRPKSFSDLVGQNVVVRSLLGAISRGRITSFYLFYGPRGTGKTSASRIFAAALNCLSFEEQRPCGLCRECIIFFSGRSKDVKEVDSVRINRTDQVKSLVKSSSIPPVSSRFKVFIVDECQLLNGETWASISNSLENLSQHVVFVMITPDLDKLPRTVVSRAQRYHFPKVKDADIVFRLQNICAEEGLDFEQEALDFIAAKSCGSVRDAEMMLDQMSLLGKKINISLAYELTGIVSDDELLDLLDLAFSSDTSNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKCENSGSEVRSRFYRKYTSEADLLKLNNALKILSETEKQLRISKNQTTWFTVALLQLSSVDYQSVDANDTKFSLRGACNGGQNLEHFATGLCANKSYRLEVPEDHKGTLDSIWYKATEMCHSSQLKTFLRKKGKLSSLHVDRSTACLAIAELEFHHSHHVSKAEKSWKMIASSLQFILGCNVELRITYTPCASDSKYSKLKRTTFSIFTCSRRNRQQKSASSNEQGSESDCGDCTSENPMMKDKTSTSDCGMDAVTALRSREGNLLSSGERFFNRSFQESMRTSCAEVDSSKEKGCNGAHLDPSILDSDNDHFNCFPKTLWLQKKFRSSYSSKFTFQGIQQQKDFVLSVPKCTCSGTYTYANEPCIFSGSCKNCTKAS 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02017 952 CDD HLD_clamp_pol_III_gamma_tau 458 521 IPR045085 -
Phco7g02017 952 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 286 708 - -
Phco7g02017 952 Gene3D - 459 521 - -
Phco7g02017 952 Gene3D - 278 456 IPR027417 -
Phco7g02017 952 Coils Coil 600 620 - -
Phco7g02017 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 287 507 IPR027417 -
Phco7g02017 952 SMART AAA_5 317 460 IPR003593 GO:0016887
Phco7g02017 952 NCBIfam DNA polymerase III subunit gamma/tau 285 631 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Phco7g02017 952 MobiDBLite consensus disorder prediction 791 822 - -
Phco7g02017 952 SUPERFAMILY post-AAA+ oligomerization domain-like 522 632 IPR008921 GO:0003677|GO:0006260
Phco7g02017 952 FunFam Protein STICHEL-like 1 isoform C 522 635 - -
Phco7g02017 952 Gene3D - 522 635 - -
Phco7g02017 952 FunFam DNA polymerase III subunit gamma/tau 459 521 - -
Phco7g02017 952 Pfam DNA polymerase III, delta subunit 301 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02017 Phco-Chr7 34575490 34579157 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02017 7 34575490 34579157 Phco7g02017 7 34575490 34579157 ECH
Phco8g00611 8 6143756 6148984 Phco7g02017 7 34575490 34579157 PCT