Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00505 ATGAAAGGCTTTTTATGGGAAAATAGCGCTAGAAAAAAGGTTAGCAGTTGCGGCTTGCGAGTGCAGTGCTGTTTGCGGTGCCTGCCAGCTGCGAAACCCCTCCCAAATCTCTTCCTTCTTCATCTTCTCCTCTTCTCCATCTCTGCACTTTTCTCAACACAGCGTTGCAGGACGATGATTAAACTATTTAAAGTCAAGGAGAAGCAGAGAGAACAAGCAGAGAATGCAAGTGGAGGACCACCTGTTAAGAAGCAATCAGCTGGGGAGTTGCGTCTTCACAAAGATATAAGTGAGTTGAATCTGCCAACATCTTGTGTCATACGATTTCCCAATGGCAAAGATGACCTGATGAACTTTGAAGTTTCAATCCAACCTGATGATGGATATTACATGGGTGGCACATTTTTGTTTACTTTCCAAGTGTCTCCCATCTATCCACACGAGGCACCAAAGGTTAAGTGCAAGACAAAGGTCTACCATCCAAATATAGACTTGGAAGGAAATGTTTGCCTTAACATCCTACGAGAAGATTGGAAACCTGTTCTCAATATAAACACAGTCATCTACGGATTGTATCATCTCTTCACGGAACCAAATTATGAGGATCCGTTGAATCATGAAGCTGCTGCGGTCTTGAGAGAGAACCCGAAGTTGTTTGAGTCTAATGTGAGGAGGGCTATGGCTGGTGGGTATGTGGGGCAAACCTTTTTCACTCGTTGTATGTAA 726 0.438 MKGFLWENSARKKVSSCGLRVQCCLRCLPAAKPLPNLFLLHLLLFSISALFSTQRCRTMIKLFKVKEKQREQAENASGGPPVKKQSAGELRLHKDISELNLPTSCVIRFPNGKDDLMNFEVSIQPDDGYYMGGTFLFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNYEDPLNHEAAAVLRENPKLFESNVRRAMAGGYVGQTFFTRCM 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00505 241 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 159 174 IPR023313 -
Phco8g00505 241 FunFam NEDD8-conjugating enzyme Ubc12 83 241 - -
Phco8g00505 241 CDD UBCc 91 225 IPR000608 -
Phco8g00505 241 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 87 232 IPR000608 -
Phco8g00505 241 SMART ubc_7 90 232 - -
Phco8g00505 241 Pfam Ubiquitin-conjugating enzyme 91 226 IPR000608 -
Phco8g00505 241 SUPERFAMILY UBC-like 76 237 IPR016135 -
Phco8g00505 241 Gene3D Ubiquitin Conjugating Enzyme 83 241 IPR016135 -
Phco8g00505 241 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 115 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00505 Phco-Chr8 4937701 4940784 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00505 8 4937701 4940784 Phco8g00505 8 4937701 4940784 ECH
Phco4g01021 4 8098044 8101760 Phco8g00505 8 4937701 4940784 PCT