Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00474 ATGGGAACTGATGGCAGTGAACTGGTAGAGACATTACCAAATCCTTGCTCTTTTAAGGTGCATCGTGCAATGTGCACGGAACTCAGGAAATTAGTTGCTAGAATCTTGCGGATAATTCCACGTATAGAAGAAGCACGTCCTTGCGGAATGCAGGCTCTGTGTTTGCTCAACAGTGCAATTGATAAAGCCGCACAACTACTACTATACTGCTCTGAATCTAGCAAACTCTACCTGGCAATGACAGGGGATTCCATACTCTCAAAATGCCAGAAGGCAAGAAAATCGATAGTAAAAAACTTAGTCCAGATTCAGAATATGGTTCCGGTGATGTTGGCTGCAGAGATTTCTCTACTAATTGGTGATCTTGAGTGTGTTACATTTGGCCTCGACTCAGCTGAAGAAGCAGCTGGGAAGGTTTTGAAACAATTGCTCCAGCAAGATTCTTCAACATCAGATAATGATTCAATGGAAGAATCTGAAATAAAACATTTTCAGTTTGTAGCAGCAAGACTTAGTATTACATCCTCATCGGCCATCTTAATAGAGAAACGATCGATTCAGAAGTTGCTTAAACAAGTCAGACCAAATAAACAGCCAAAAGAGATTGTCTTGAAAAATCTTTTGTATCTCCTGCTAAAGCACAAAAAATCAATCACCGGAGGACAAATTGAGGTCTATTTTCAAAGTGAAGGACCAATCACAACTGAGAACTCAGTTCACGAGTCTCAAAGCATCCTTCATGTCAAGTCAGACCCATACTTGAACCATGATCAATATAGAACCCATGCCAATGAGTTGGGCAGACTTACACCTCCTGAGGAATATACATGCCCAATATCTTTAAGGTTGATGTATGACCCTGTTGTCATTGCTTCAGGAGAAACATATGAAAGGATGTGGATACAAAAGTGGTTTGACGAGGGTAATACTATATGCCCAAAAACAAAAAAGAAACTGGAACATCTGGCATTGACTCCAAATGTTGTCTTCAAGGACCTAATATTAAAGTGGTCTGAAACTAATGGAGTCTCCATTCCTGACCCGAATAGACAAGTGCAACATTTGCACTCATGGGAAGCTTCCTTCAATTCCATTAAGAGTTTTGGAAGTTCTTTATATGATTTAAACTTCCAAATGGATCTTAGTAACGTGTCACTTGGATCTTTAGAGACCAGTTATAATTCAGATTGCTTTCATGCTAATGCCGATAATGGCTTAGATTTGATATTGAACAAGACCGGTGCCAATTCTCCCAGGCATCAATCTCATGCAGGGATTCATGATGCTGTTCTGACGCGCTTGTCTAAACTCCATGAACGTCAATGGCAATCTCAATGCCAACTCATTGAAGATTTGAAAATAGATTTGAAATGCAATAACCATAATTTTTGCTCTGTGCCATCTGAGAATTTTATTGACCCACTCACGAGATTTCTGAGCACTGCCTGTGAGAGGCATGATGTAAAAGCTTTGAGATCTGGAACTAAATTGCTATTGGAATTTATGAAGTGCTGCCGCAATGGTATGACCAATTTAACTGAAGATACATGCATTATGTTGGCAAGTCTTCTTGACACAGAAGTGATTGGTGAAGCTCTTACCATAATGGGAGAGCTGGCAGGAAATTGGTATGAGAAAGCTAACATTGCTGCTTCCACTGTACTCACTTCTATTTCAAAGATCCTTGATTTGGGTAGCAAAGAGTTCCAAGGAAAAGCTATTAAAATAATGCTTAATTTTTCATCCAATAGTCAAATTTGTCCCTACATGATATCTCTCGGATGCATCCCAAAATTACTGCCATTTTTTGAAGACAAAACCCTTTCAAGAGACTGTATACATATTTTGAAAAACCTTTGTGATACTGAAGAGGGTAGGGTTTCTGTGGTTGAAACAAAAGGATGCATATATTCTGTTGTTGAAATACTTGGGACTGGCAGTGATGAGGAAAAAGAACCGGCACTTGATATTCTACTCTCTTTATGCTCTCAACGTGTGGAATACTGTGAGATGATTATGGATGAGGGGATTATTCCTTCTCTTGTGGACATCTCCAAATCAGGAAGTGATATGGCAAAGGCTTTTGCATTTGAACTACTACGTCTTTTGAGGAAGGAGTTTGAGGATGAAGACTGTTATGAGCCAAATTTCAATGCCTCTCAAGAATCTACCAATCGCTATCAAGAAAAGAAATCACCAAAGAAACCTTCCATTTTGAAGAGACTATCAATCTTCTCAAAATCCAGTTCAGTTGCACCAAAAAACAAGAGATGA 2274 0.3923 MGTDGSELVETLPNPCSFKVHRAMCTELRKLVARILRIIPRIEEARPCGMQALCLLNSAIDKAAQLLLYCSESSKLYLAMTGDSILSKCQKARKSIVKNLVQIQNMVPVMLAAEISLLIGDLECVTFGLDSAEEAAGKVLKQLLQQDSSTSDNDSMEESEIKHFQFVAARLSITSSSAILIEKRSIQKLLKQVRPNKQPKEIVLKNLLYLLLKHKKSITGGQIEVYFQSEGPITTENSVHESQSILHVKSDPYLNHDQYRTHANELGRLTPPEEYTCPISLRLMYDPVVIASGETYERMWIQKWFDEGNTICPKTKKKLEHLALTPNVVFKDLILKWSETNGVSIPDPNRQVQHLHSWEASFNSIKSFGSSLYDLNFQMDLSNVSLGSLETSYNSDCFHANADNGLDLILNKTGANSPRHQSHAGIHDAVLTRLSKLHERQWQSQCQLIEDLKIDLKCNNHNFCSVPSENFIDPLTRFLSTACERHDVKALRSGTKLLLEFMKCCRNGMTNLTEDTCIMLASLLDTEVIGEALTIMGELAGNWYEKANIAASTVLTSISKILDLGSKEFQGKAIKIMLNFSSNSQICPYMISLGCIPKLLPFFEDKTLSRDCIHILKNLCDTEEGRVSVVETKGCIYSVVEILGTGSDEEKEPALDILLSLCSQRVEYCEMIMDEGIIPSLVDISKSGSDMAKAFAFELLRLLRKEFEDEDCYEPNFNASQESTNRYQEKKSPKKPSILKRLSIFSKSSSVAPKNKR 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00474 757 PANTHER U BOX DOMAIN-CONTAINING 23 706 - -
Phco8g00474 757 Pfam U-box domain 272 341 IPR003613 GO:0004842|GO:0016567
Phco8g00474 757 FunFam RING-type E3 ubiquitin transferase 270 342 - -
Phco8g00474 757 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Phco8g00474 757 CDD RING-Ubox_PUB 272 324 IPR045210 -
Phco8g00474 757 Gene3D - 408 712 IPR011989 -
Phco8g00474 757 SUPERFAMILY RING/U-box 266 347 - -
Phco8g00474 757 MobiDBLite consensus disorder prediction 715 737 - -
Phco8g00474 757 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Phco8g00474 757 SUPERFAMILY ARM repeat 435 703 IPR016024 -
Phco8g00474 757 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 345 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00474 Phco-Chr8 4474757 4478347 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00474 8 4474757 4478347 Phco8g00474 8 4474757 4478347 ECH
Phco8g00474 8 4474757 4478347 Phco4g00959 4 7572214 7575956 ECH
Phco4g00959 4 7572214 7575956 Phco8g00474 8 4474757 4478347 PCT