Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00439 ATGCTATCTTTCAGACTCACTTTTGTAACTCTCTCACTTTTCCTAACCTCATGGGTTACTGATTCAGCCACGCATTGGGACGACACGCAGCTTCTGAAGGAACTGAAGAACAACCTCAACCCTGCTTCCTTCACCCCCGGCTCCTGCATCTACTCATGGGACTTCTCCTTTGATCCCTGCGACAACCTCTTCAGTGACAAGTTCACCTGCGGCTTCAGGTGCGACGCCGTCGTTTCGGGAACTACTCGACTCACCGAACTCACACTCGACCCCGCTGGTTACACCGGCACTCTCCCCGCCACCTGGAACCTCCCCTACCTCCAAACTCTCGACGTCTCAAACAACTTCTTTTCAGGCCAAATCCCCGACTCATTCTCCAATCTCACGCGGTTAACTCGACTCGGTTTATCCAAAAACTCCCTCACCGGAACTATACCCTCTTCCTTATCCTCCCTCTCAAACCTCCAAGAGCTTTACCTCGACAACAACAACCTCCAAGGACCAATCCCCGTTACTTTTAACGGCCTCACCAACCTTAAACGCCTCGAAATGCAGTCCAACAAGCTAAACGGCGTCGTTCCCAGTTTGAGCTCTCTGAAGAGTCTTTACTACTTGGACCTCAGCTTCAATTTTTTCACCGGAGGGTTCCCCTCCACGTTGCCCGAATCTCTTATTCAGATTTCAATGCGGAACAACAGCTTAAGCGGCGCGTTGGAACCAGAATCTCTGAGGAACTTGAACTCCTTGCAAGTGGTGGATTTGAGTGCCAACGGGTTCAGCGGTGCCGTTCCGTTTGCGCTGTTCGAGCTTCCCTCGTTGCAGCAAGTGACGCTCTCTTTCAACCAGTTCTCGCAGGTGGAAGTGCCTTCTTACGCTTTGGAAATGCGAAGCGGGGTTATAGCCGTTGATCTGAGTGACAACGAGCTTGGGGGGTTTCTGCCGTTGTTCCCGGCGTTGATGCCGAGGCTTTCGTCTTTGTCGTTGGAGAACAACAAGTTCGTGGGAATGATTCCGACCCAGTACGCGTTGAAGACAGTTTTCCCCGAGGCTGGGATGGCTCCGTTCGAGAGGCTTCTGTTGGGGGGGAATTACTTGTTCGGAGCTATTCCGAGTCCTCTAATGGCGCTTGAACCGGGTTCTGCCATGGTGAGTCTTGTCGATAATTGCTTGTATAGGTGTCCTCTTAGCTTCTTCTTTTGTCAGGGAGGCCAACAAAAGTCTTTTCAACAGTGTAAGAGATTTAGCCGCTTCATTCCCTAG 1260 0.5143 MLSFRLTFVTLSLFLTSWVTDSATHWDDTQLLKELKNNLNPASFTPGSCIYSWDFSFDPCDNLFSDKFTCGFRCDAVVSGTTRLTELTLDPAGYTGTLPATWNLPYLQTLDVSNNFFSGQIPDSFSNLTRLTRLGLSKNSLTGTIPSSLSSLSNLQELYLDNNNLQGPIPVTFNGLTNLKRLEMQSNKLNGVVPSLSSLKSLYYLDLSFNFFTGGFPSTLPESLIQISMRNNSLSGALEPESLRNLNSLQVVDLSANGFSGAVPFALFELPSLQQVTLSFNQFSQVEVPSYALEMRSGVIAVDLSDNELGGFLPLFPALMPRLSSLSLENNKFVGMIPTQYALKTVFPEAGMAPFERLLLGGNYLFGAIPSPLMALEPGSAMVSLVDNCLYRCPLSFFFCQGGQQKSFQQCKRFSRFIP 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00439 419 Gene3D Ribonuclease Inhibitor 198 405 IPR032675 -
Phco8g00439 419 FunFam Nuclear pore complex protein NUP107 25 195 - -
Phco8g00439 419 Pfam Leucine rich repeat 105 165 IPR001611 GO:0005515
Phco8g00439 419 SUPERFAMILY L domain-like 48 398 - -
Phco8g00439 419 Gene3D Ribonuclease Inhibitor 27 195 IPR032675 -
Phco8g00439 419 SMART LRR_typ_2 176 199 IPR003591 -
Phco8g00439 419 SMART LRR_typ_2 152 175 IPR003591 -
Phco8g00439 419 SMART LRR_typ_2 104 127 IPR003591 -
Phco8g00439 419 SMART LRR_typ_2 270 295 IPR003591 -
Phco8g00439 419 SMART LRR_typ_2 128 151 IPR003591 -
Phco8g00439 419 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 12 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00439 Phco-Chr8 4028784 4030043 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00439 8 4028784 4030043 Phco8g00439 8 4028784 4030043 ECH
Phco8g00439 8 4028784 4030043 Phco4g00906 4 7170391 7171644 ECH
Phco4g00906 4 7170391 7171644 Phco8g00439 8 4028784 4030043 PCT