Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00906 ATGGGATCTCTCTGTGTCCCTCTATCAGCGATCATCGCTATTTGGTGTCTATTATTGGGTGCTGAATCGAAGACACATTGGGGAGATGCAGAGGTTCTCAAGGAGTTAAAGCAGGGTTTGGAACCAGCTTCGGTGATCCCAGGCTCTTGCGTCAGTTCCTGGGACTTCACCCTCGACCCCTGCGACAACCTATTCACCGACAAATTCACGTGCGGCTTCAGATGCGACGTCGTCGTTTCAGGCCTCAGTCGAGTCACGGAACTTGCGCTGGACCAAGCGGGTTATGTTAGCTCTCTCACCTTCACGTGGAACCTTCCTTTTCTACAAACACTCGATCTCTCCAAAAACAACTTCTCCGCCCAAATTCCTGATTCCTTTTCAAACCTAACTCGCCTCCGCCGACTCAGTCTCTCGTCGAACTCCTTCTCCGGCGAGATACCCCCTTCCCTCGGCACACTCCCCAGCCTCGAAGAGCTTTACCTCGACAGCAACAACCTACGAGGAACAATCCCACAAGGCTTCCACAACCTTAAAAGACTCGAACTCCAATCCAACAAACTCAACACCCACCTACCAAACTTTGACACCTTCACAAACCTTAAATACCTCGATTTCAGCGATAACTCCATTGCGGGAGAGTTACCGGCCTCGCTCCCTGTTTCGCTGGTTCAGATATCAATTCGGAACAACAATTTAAACGGTGTCTTATCGAGTGAAAGCTTCAGGAATTTGAAGAGGTTGCAGGTGGTGGATTTCAGCTCCAACCGAATGAGTGGTTTAATTCCTTCGGTTTTCTTCGAGCTCCCGTCGTTGCAGCAGTTGACGCTGTCCTTCAACGAGTTCACAAAGGTTGAAGCACCTTATAAGGGAGTGGAGTCGCGGAGCGGACTTATAGCGGTTGATTTGAGCAACAACAGGCTTGAGGGGTTTTTGCCGTCATTCATGGCGATGATGCCGAAGTTATCGTCGTTGTCCTTGGAGAATAACGAGTTCACAGGGCGAATAGCGACCCAGTTAGCGGAGAAAACGGTGTCTCCCAAAACGGGAGTGTCTCCGTTAGAGAGGCTTCTGTTGAGGGGGAATTACTTGGTGGGAGGGATTCCTCGGCCCTTGTTAACGTTGAAACGCGATTCTGCGAACGTGAGTTTAGTGGATAACTGCTTGTACAGGTGTCCTCATAGTTTCTTTTTCTGCCAAGGTGGACAACAGAAGTCATTGGCACAGTGTAACAGATTTGTCTCAACTACTGAATAA 1254 0.4952 MGSLCVPLSAIIAIWCLLLGAESKTHWGDAEVLKELKQGLEPASVIPGSCVSSWDFTLDPCDNLFTDKFTCGFRCDVVVSGLSRVTELALDQAGYVSSLTFTWNLPFLQTLDLSKNNFSAQIPDSFSNLTRLRRLSLSSNSFSGEIPPSLGTLPSLEELYLDSNNLRGTIPQGFHNLKRLELQSNKLNTHLPNFDTFTNLKYLDFSDNSIAGELPASLPVSLVQISIRNNNLNGVLSSESFRNLKRLQVVDFSSNRMSGLIPSVFFELPSLQQLTLSFNEFTKVEAPYKGVESRSGLIAVDLSNNRLEGFLPSFMAMMPKLSSLSLENNEFTGRIATQLAEKTVSPKTGVSPLERLLLRGNYLVGGIPRPLLTLKRDSANVSLVDNCLYRCPHSFFFCQGGQQKSLAQCNRFVSTTE 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00906 417 Pfam Leucine Rich Repeat 199 218 IPR001611 GO:0005515
Phco4g00906 417 Pfam Leucine rich repeat 108 166 IPR001611 GO:0005515
Phco4g00906 417 Pfam Leucine rich repeat 222 280 IPR001611 GO:0005515
Phco4g00906 417 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 101 191 - -
Phco4g00906 417 Gene3D Ribonuclease Inhibitor 194 291 IPR032675 -
Phco4g00906 417 SUPERFAMILY L domain-like 45 389 - -
Phco4g00906 417 Gene3D Ribonuclease Inhibitor 28 193 IPR032675 -
Phco4g00906 417 Gene3D Ribonuclease Inhibitor 292 394 IPR032675 -
Phco4g00906 417 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 11 410 - -
Phco4g00906 417 SMART LRR_typ_2 105 128 IPR003591 -
Phco4g00906 417 SMART LRR_typ_2 244 267 IPR003591 -
Phco4g00906 417 SMART LRR_typ_2 268 289 IPR003591 -
Phco4g00906 417 SMART LRR_typ_2 129 151 IPR003591 -
Phco4g00906 417 SMART LRR_typ_2 153 176 IPR003591 -
Phco4g00906 417 SMART LRR_typ_2 197 221 IPR003591 -
Phco4g00906 417 SMART LRR_typ_2 318 346 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00906 Phco-Chr4 7170391 7171644 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00906 4 7170391 7171644 Phco4g00906 4 7170391 7171644 ECH
Phco8g00439 8 4028784 4030043 Phco4g00906 4 7170391 7171644 ECH
Phco4g00906 4 7170391 7171644 Phco8g00439 8 4028784 4030043 PCT