Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00396 ATGGCTGCTGCTGTTAGTGCTGCAGTCTCTTTTCCATCCACCAAGTCTACCTCTCTCCCAAGTAGGACCTCCATCATTGCCCCAGAGAGAGTCATTTTCAAGAAGGTTCCATTTCAATACAGAGATGTTTCTAGCAGTGGAAGGGTAGTTTCCATCAGAGCTCAAGTCACCACTGAAGCACCAGCCAAGGTTGAAAAAGAGTCTAAGAAACAGGATGAAGGTGTGATTGTGAACAAGTTCAAACCCAAGACCCCATACATTGGTAGATGCCTTCTCAACACAAAGATCACTGCGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACTGAGGGAGAGGTTCCTTACAGAGAAGGACAATCAATTGGAGTGATTCCGGAGGGTGTTGACAAGAATGGCAAACCTCATAAACTGAGATTGTATTCTATTGCCAGCAGTGCCATTGGTGACTTTGGTGATTCCAAGACTGTTTCTCTGTGCGTGAAACGACTAGTGTACACAAATGATAGTGGAGAAATTGTCAAGGGAGTCTGCTCAAATTTCTTGTGTGACCTGAAGCCAGGATCTGAAGTAACAATAACTGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCTAATGCCACTGTTGTCATGTTGGCAACTGGAACTGGGATTGCCCCATTTCGCTCATTTTTATGGAAAATGTTCTTCGAGAAGCACGAAGATTACAAGTTCAATGGTTTGGCATGGCTCTTCTTGGGTGTCCCTACAAGCAGCTCATTGCTTTATAAGGAGGAATTTGAAAAGATGCAAGAGAAATACCCTGACAACTTCAGGCTTGACTTTGCTGTGAGCAGAGAACAAACAAATGAGCAAGGAGAGAAAATGTACATCCAAACTCGAATGGCTCAATATGCAGAAGAGCTTTGGGAACTACTGAAGAAGGAGAATACTTTTGTGTATATGTGTGGACTAAAAGGAATGGAAAAGGGAATTGATGAGATTATGGGATCATTGGCTGCCAGAGATGGCATTGAATGGATTGAGCACAAGAAGAAATTGAAGAAAGCAGAGCAATGGAATGTGGAAGTCTATTAA 1089 0.4325 MAAAVSAAVSFPSTKSTSLPSRTSIIAPERVIFKKVPFQYRDVSSSGRVVSIRAQVTTEAPAKVEKESKKQDEGVIVNKFKPKTPYIGRCLLNTKITADDAPGETWHMVFSTEGEVPYREGQSIGVIPEGVDKNGKPHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDSGEIVKGVCSNFLCDLKPGSEVTITGPVGKEMLMPKDPNATVVMLATGTGIAPFRSFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMQEKYPDNFRLDFAVSREQTNEQGEKMYIQTRMAQYAEELWELLKKENTFVYMCGLKGMEKGIDEIMGSLAARDGIEWIEHKKKLKKAEQWNVEVY 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00396 362 Gene3D - 200 362 IPR039261 -
Phco8g00396 362 Gene3D Translation factors 53 199 - -
Phco8g00396 362 Pfam Oxidoreductase NAD-binding domain 215 329 IPR001433 GO:0016491
Phco8g00396 362 PIRSF FNR-PetH 2 362 IPR035442 GO:0016491
Phco8g00396 362 PANTHER - 4 362 IPR015701 GO:0016491
Phco8g00396 362 FunFam Ferredoxin--NADP reductase, chloroplastic 200 362 - -
Phco8g00396 362 FunFam Ferredoxin--NADP reductase, chloroplastic 67 199 - -
Phco8g00396 362 CDD CYPOR_like_FNR 78 362 - -
Phco8g00396 362 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 208 362 IPR039261 -
Phco8g00396 362 SUPERFAMILY Riboflavin synthase domain-like 69 204 IPR017938 -
Phco8g00396 362 PIRSF Frd-NADP+_RD 1 362 IPR015701 GO:0016491
Phco8g00396 362 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 83 205 IPR017927 GO:0016491
Phco8g00396 362 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 178 187 IPR001709 GO:0016491
Phco8g00396 362 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 214 233 IPR001709 GO:0016491
Phco8g00396 362 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 316 324 IPR001709 GO:0016491
Phco8g00396 362 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 141 148 IPR001709 GO:0016491
Phco8g00396 362 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 244 253 IPR001709 GO:0016491
Phco8g00396 362 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 256 267 IPR001709 GO:0016491
Phco8g00396 362 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 118 128 IPR001709 GO:0016491
Phco8g00396 362 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 292 308 IPR001709 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00396 Phco-Chr8 3602674 3605455 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00396 8 3602674 3605455 Phco8g00396 8 3602674 3605455 ECH
Phco8g00396 8 3602674 3605455 Phco4g00856 4 6636030 6638673 ECH
Phco4g00856 4 6636030 6638673 Phco8g00396 8 3602674 3605455 PCT