Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00856 ATGACACATTGCATTACAACACAAATAAACTTATCCTCACATCTGCCTCTGCATTGCCTTACAAATCTCATCCACCCAATCTTAAAATCTTCTGTGCAACCTGAAATAACCACTCTAGCCTCACTCATTCTTTTTCTTTTCATTCTTCACTGCACACACACCATATCATCACTCTCTCTTTCTGTCTCTAGTTTTTACAACATGGCTAATGCGGTAACTGCTGCAGTCTCCTTTCCCGCCTCTAAGTCCACCTCCCTTCCAACCAGAACCTCTGTCACTGCCCCAGATAGAATACTCTTCAAGAAGCTTTCGTTACAATACAGAGATGTTTCAGTCAGTGGAAGGGTAGTTTCGGTCAGAGCCCAAGTGACCACAGAGGCACCTGCAAAGGTTGAAAAGGAATCCAAGAAACAAGATGAAGGTCTGATCGTGAACAAGTTCAAACCCAAGGACCCCTATATTGGTAGGTGTCTCCTCAACACAAAGATCACCGGGGATGATGCACCCGGGGAAACTTGGCACATGGTCTTCAGCACTGAGGGAGAAGTTCCTTACAGAGAAGGACAATCAATCGGGGTAATTGCTGATGGGGTTGACAAGAATGGCAAGCCTCACAAACTGAGATTGTATTCTATTGCCAGCAGTGCCCTTGGTGATTTTGGAGATTCAAAAACTGTTTCTTTATGCGTGAAACGACTTGTGTACACAAATGAAAATGGAGAACTTGTCAAGGGAGTTTGCTCAAATTTCTTATGCGACTTAAAGCCAGGAGCCGAGGTAAAGATTACTGGACCTATTGGTAAAGAAATGCTTATGCCAAAAGATCCCAATGCCACAGTGATTATGTTGGCCACTGGAACTGGAATTGCCCCATTTCGCTCATTTTTATGGAAAATGTTCTTCGAGAAGCATGATGATTACAGGTTCAATGGTTTGGCATGGCTCTTCCTGGGTGTTCCCACAAGCAGCTCACTACTTTATAAGGAGGAATTTGAAAAGATGAAGGAGAAAGCACCTGAGAACTTCAGACTTGACTTTGCTGTGAGCAGAGAGCAAACAAACGAGAAGGGAGAAAAGATGTACATCCAAACAAGAATGGCTCAATATGCAGAAGAGTTATGGGAATTGCTGAAGAAAGATAACACTTTTGTGTACATGTGTGGATTGAAAGGAATGGAAAAGGGAATCGATGACATAATGGTGTCATTGGCAGCGAAAGATGGTATCGATTGGATTGACTATAAGAGGCAATTGAAGAAGGCAGAACAATGGAATGTGGAAGTATACTGA 1290 0.4287 MTHCITTQINLSSHLPLHCLTNLIHPILKSSVQPEITTLASLILFLFILHCTHTISSLSLSVSSFYNMANAVTAAVSFPASKSTSLPTRTSVTAPDRILFKKLSLQYRDVSVSGRVVSVRAQVTTEAPAKVEKESKKQDEGLIVNKFKPKDPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYREGQSIGVIADGVDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGELVKGVCSNFLCDLKPGAEVKITGPIGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFFEKHDDYRFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNEKGEKMYIQTRMAQYAEELWELLKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDGIDWIDYKRQLKKAEQWNVEVY 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00856 429 Gene3D - 267 429 IPR039261 -
Phco4g00856 429 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 150 272 IPR017927 GO:0016491
Phco4g00856 429 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 270 429 IPR039261 -
Phco4g00856 429 CDD CYPOR_like_FNR 145 429 - -
Phco4g00856 429 Pfam Oxidoreductase NAD-binding domain 282 396 IPR001433 GO:0016491
Phco4g00856 429 Gene3D Translation factors 120 266 - -
Phco4g00856 429 PIRSF Frd-NADP+_RD 68 429 IPR015701 GO:0016491
Phco4g00856 429 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 311 320 IPR001709 GO:0016491
Phco4g00856 429 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 185 195 IPR001709 GO:0016491
Phco4g00856 429 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 359 375 IPR001709 GO:0016491
Phco4g00856 429 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 281 300 IPR001709 GO:0016491
Phco4g00856 429 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 383 391 IPR001709 GO:0016491
Phco4g00856 429 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 208 215 IPR001709 GO:0016491
Phco4g00856 429 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 245 254 IPR001709 GO:0016491
Phco4g00856 429 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 323 334 IPR001709 GO:0016491
Phco4g00856 429 PANTHER - 71 429 IPR015701 GO:0016491
Phco4g00856 429 FunFam Ferredoxin--NADP reductase, chloroplastic 267 429 - -
Phco4g00856 429 PIRSF FNR-PetH 57 429 IPR035442 GO:0016491
Phco4g00856 429 SUPERFAMILY Riboflavin synthase domain-like 129 273 IPR017938 -
Phco4g00856 429 FunFam Ferredoxin--NADP reductase, chloroplastic 134 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00856 Phco-Chr4 6636030 6638673 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00856 4 6636030 6638673 Phco4g00856 4 6636030 6638673 ECH
Phco8g00396 8 3602674 3605455 Phco4g00856 4 6636030 6638673 ECH
Phco4g00856 4 6636030 6638673 Phco8g00396 8 3602674 3605455 PCT