Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00386 ATGGTGCTCGAGGCCACTATGATCTGTATTGACAATTCGGAATGGATGCGCAATGGAGATTACGCCCCTTCTCGATTTCAAGCCCAAGCAGACGCCGTCAATCTTATTTGCGGTGCTAAAACCCAGTCTAATCCAGAAAATACGGTTGGAGTTCTCACGATGGCAGGGAAGGGCGTTCGTGTCTTGGTCACTCCTACCAGTGATTTGGGCAAGATCTTAGCTTGCATGCATGGACTAGAAATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACAATTGGCTCTTAAGCATAGGCAGAACAAGAAGCAGCAGCAAAGGATTATTGTCTTTGCTGGAAGTCCTGTTAAACATGAGAAGAAAATGTTGGAGATGATTGGTAGAAAATTGAAAAAGAATAGTGTGGCACTTGACATTGTCAATTTTGGCGAAGAAGATGAAGGAAAGAATGAGAAGTTGGAAGCACTCCTTTCCGCGGTCAACAATAATGATACCAGCCACATCGTCCATGTTCCATCTGGTCCAAATGCTCTTTCTGATGTACTAATAAGTACTCCTATTTTTACTGGTGACGGGGAAGGTGGAAGTGGTTTTGCAGCAGCTGCAGCAGCAGGTGGTGTATCTGGATTTGAGTTTGGTGTTGATCCAAACTTGGACCCCGAACTAGCTCTTGCTCTAAGAGTTTCAATGGAAGAAGAGAGAGCTAGACAGGAAGCAGCTGCCAAAAAAGCTGCAGAGGATACTTCTAAACAGGAGAAAGGTGATGAGCAGAAGGCTAGTCCACAGGATACAACAATGACCGAGGGTGCCAGTGCAGCAGCTTCTGAAGCCAATAATAAGAAAACTGATTTGACGGACGACGAGAATGCTCTACTACAGCAGGCTCTTGCAATGTCAATGGACGATCCTGCAATCAGCCATGATGTGAGAGATACAGATATGTCTGAAGTAGCTGCTGATGATCCTGAGTTGGCTCTAGCTCTCCAATTGTCAGTAGAAGATAGCTCAAAGGACTCGACAAGCCAGTCTGACGTCAGTAAATTGTTGGCAGATCAGTCCTTTGTATCTTCTATCCTTGCATCGCTTCCCGGAGTTGACCCAAATGACCCATCGGTCAAAGATTTACTGGCTTCTATGCAAAATCAGTCTGAGCCACAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAGAAGAAGAAGCCCGCATGTAAATGTTTGAGTTGGGCCCAATGGTGTGAGGCATGGACCAATCTCCACACTATATTACTTTATTTGTGGGGTCTCTTCAAAGCTTTGGTTATATCCTTTTCCTTATCAATTGAGTGCCATAATCTTCACACCCATCAAAGTTTTGGAGTCTGCAGAATGGGAATCCCTTTAGCTGCAGAGGCTTTCTCTGCTTTTCTACTTCTTTCCTTCTATGCAACACTAGTTTCTACCAAATACATCAACTACAATACAGGTGCTGCTATTGTGCCAGCAAAATTGAATGTTCACCTGGTTCCACACTCCCATGATGATGTTGGTTGGCTCAAAACCGTTGACCAGTACTATGTTGGATCAAACAACAGTATCCAGGGGGCATGTGTTGAGAATGTGCTTGATTCGGTGGTTGTGTCTCTTAAGAAAGACCCAAATAGAAAGTTTGTGTTTGCCGAAATGGCCTTTTTCCATCGATGGTGGATAGAACAAAGTCCAGAAACACAAGAAGAAGTGAGAAAGCTTGTGGACGCGGGGCAGCTAGAAATCATAAATGGTGGTTGGTGCATGCACGATGAAGCTGCAACGCACTACATAGACATGATTGATCAAACCACTTTGGGCCATCGATTTATTAAGGATGAGTTTAACAAGACTCCCACCGTTGGATGGCAGATTGATCCATTTGGACACTCTGCTGTGCAGGCTTACCTTCTTGGAGCTGAGCTTGGGTTTGATTCTGTACATTTTGCAAGAATTGATTATCAAGATAGAGCTAAGCGCAAAGCTGATAAGTCTCTTGAAGTTGTTTGGCGTGCCTCCAAAACCTTTGGTTCTTCAGCTCAGATTTTTGCCAATGCTTTCCCTGTTCATTATAGTGCTCCAAATGGTTTCAACTTTGAAGTCAACAATGCTGATGTTGATGTTGTTCCTGTGCAGGATGATCCTCTTATTTTTGACTACAACGTTGAACGACGTGTCCAAGACTTTATTGATGCTGCTATTACCCAAGCAAATGTGACGAGGACAAACCATATAATGTGGACAATGGGTGATGATTTCCAGTACCAATATGCGGAGTCTTGGTTCAAGCAAATGGATAAATTAATTCACTATGTTAATAAGGATGGTAGAGTAAATGCTTTGTATTCCACTCCATCTATTTACACCAATGCCAAAAATGCTGCTCATCAAACTTGGCCACTGAAAACTGATGATTACTTCCCGTATGCTGATAGAGCTAATGCTTATTGGACTGGCTATTTCACGAGTCGCCCAGCCTTAAAGCGATATGTTAGGATGATAAGTGGATACTATTTGGCAACGCGTCAACTTGAATCTTTTGTTGGAAAGCAATCAGATAAATACAATACTTTTGGTCTTGGAGATGCTCTAGGAATTGCACAACACCATGATGCTGTCAGTGGCACTGCCAAACAGCATACAACTAATGACTATGCCAAACGACTAGCTATTGGAGTCTCTGAGGCTGAAGCAGTTTTTAGTTCTTCTTTGGCTTGTCTTACTAGTAAGAAATCAAGTGGTCAATGTTCAGCACCTGCATCGGCTTTTGCCCAGTGTCAATTGTTAAATATCAGTTACTGCCCTCCTACAGAAGATGGCATTCCAGACGCTAAGAGTTTGGTAGTTGTGGTGTATAACCCACTTGGATGGAAACGTACTGATATCGTCAAAATACCAGTTAATGATGCTAATCTTGTGGTCAAAGACTCACTGGGCAATAATATTGAAGTACAATATGTGGGTGTGGATGATGTTACAACAAAATTAAGAAAGCTCTATGTGAAGGCTTATTTGGGGGTGTCACCAAAACAAGACCCGAAGTACTGGCTTCTGTTTCAGGCGTCAGTACCTCCACTTGGATGGAGCACGTATTTCATTTATAAAGCAACAGGAAAAGGGTCCAGAACAAAAAACCTATCTCACATGGGCACTCAGAAAGGTGACACCATTGACATTGGGCCCGGAAATTTAAAGATGTCCTTTTCCTCAACCTCTGGACAACTTAAAAGGATGTATAATTCTAGAACTGGAGTTGATATACCTATTCAGCAAAGCTATCTCTATTATGAATCTAGTGAGGGTGATAATGATCCTCAGGCTTCTGGTGCATATATATTCCGGCCTAATGGATCCCCTCCAACTATCGTTTCAAGATCAGTGCCCATCAAGGTAATCCGTGGACCACTAGTTGATGAAGTTCATCAGAATTTTAGCTCTTGGATTTATCAGGTTACTAGGCTTTACAAAGACAAAGACCATGCTGAAGTCGAATTCACTATTGGTTCAATTCCTACCGATGATGGAGTAGGAAAAGAGGTGATCACACGAATGACAGCAAATATGGCCACAAACAAGGAGTTTTATACTGATTCCAATGGCAGAGATTTTCTCAAACGAGTTCGAGATCATAGGGATGATTGGCCCCTTCAAGTAACTCAACCAATAGCAGGAAACTATTACCCACTTAATCTTGGAATTTATACCAAGGATAAGAAATCTGAGTTCTCAGTCTTAGTTGATCGTGCCACTGGTGGGGCTAGCATCAAAGATGGTGAGGTGGAATTGATGCTTCATAGGCGTATTCTTCGCGATGATAGTCGAGGAGTTGGGGAACCACTTGATGAACAAGTTTGCGTGAACAATAACGAAACATGTGAAGGACTAACAGTCAGAGGAAATTATTATATCAGCATAGACAAACTTGGAGCTGGTGCACGCTGGCGCCGCACAACTGGTCAAGAAATCTATTCGCCATTCTTATTGGCCTTTACACATGAGAACTTGGAAAGTTGGAAGTCCTCACATTTGACCAAAGGAACGATCATGGATCCAAATTACAGCTTGCCTCCCAATGTCGCTCTGATAACTCTTGAGGAGTTGGATGGTGGAATTGTGCTTCTCCGTTTGGCACATCTGTATGAGCCAAGTGAAGATGCCGAGTATTCAACTCTAACCAAAGTTGAACTGAAGAAGTTGTTTGCCAAGAAAACGATAAAGGAGTTGAAGGAGGTAAGTTTATCAGCTAACCAAGAGAAGTCAGAAATGAAGAGAATGACATGGAAGGTTGAAGGGGACAAAGGACAAGAACCTCAAGGACTTAGGGGTGCCCCTGTCAGCAGTCCTAATTTGGTTGTTGAGCTAGGCCCCATGGAAATACGAACTTTCCTTTTGAAACTTTAA 4419 0.4293 MVLEATMICIDNSEWMRNGDYAPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPVKHEKKMLEMIGRKLKKNSVALDIVNFGEEDEGKNEKLEALLSAVNNNDTSHIVHVPSGPNALSDVLISTPIFTGDGEGGSGFAAAAAAGGVSGFEFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDTSKQEKGDEQKASPQDTTMTEGASAAASEANNKKTDLTDDENALLQQALAMSMDDPAISHDVRDTDMSEVAADDPELALALQLSVEDSSKDSTSQSDVSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQNQSEPQQKNEDKPPNEEEKKKKKPACKCLSWAQWCEAWTNLHTILLYLWGLFKALVISFSLSIECHNLHTHQSFGVCRMGIPLAAEAFSAFLLLSFYATLVSTKYINYNTGAAIVPAKLNVHLVPHSHDDVGWLKTVDQYYVGSNNSIQGACVENVLDSVVVSLKKDPNRKFVFAEMAFFHRWWIEQSPETQEEVRKLVDAGQLEIINGGWCMHDEAATHYIDMIDQTTLGHRFIKDEFNKTPTVGWQIDPFGHSAVQAYLLGAELGFDSVHFARIDYQDRAKRKADKSLEVVWRASKTFGSSAQIFANAFPVHYSAPNGFNFEVNNADVDVVPVQDDPLIFDYNVERRVQDFIDAAITQANVTRTNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKDGRVNALYSTPSIYTNAKNAAHQTWPLKTDDYFPYADRANAYWTGYFTSRPALKRYVRMISGYYLATRQLESFVGKQSDKYNTFGLGDALGIAQHHDAVSGTAKQHTTNDYAKRLAIGVSEAEAVFSSSLACLTSKKSSGQCSAPASAFAQCQLLNISYCPPTEDGIPDAKSLVVVVYNPLGWKRTDIVKIPVNDANLVVKDSLGNNIEVQYVGVDDVTTKLRKLYVKAYLGVSPKQDPKYWLLFQASVPPLGWSTYFIYKATGKGSRTKNLSHMGTQKGDTIDIGPGNLKMSFSSTSGQLKRMYNSRTGVDIPIQQSYLYYESSEGDNDPQASGAYIFRPNGSPPTIVSRSVPIKVIRGPLVDEVHQNFSSWIYQVTRLYKDKDHAEVEFTIGSIPTDDGVGKEVITRMTANMATNKEFYTDSNGRDFLKRVRDHRDDWPLQVTQPIAGNYYPLNLGIYTKDKKSEFSVLVDRATGGASIKDGEVELMLHRRILRDDSRGVGEPLDEQVCVNNNETCEGLTVRGNYYISIDKLGAGARWRRTTGQEIYSPFLLAFTHENLESWKSSHLTKGTIMDPNYSLPPNVALITLEELDGGIVLLRLAHLYEPSEDAEYSTLTKVELKKLFAKKTIKELKEVSLSANQEKSEMKRMTWKVEGDKGQEPQGLRGAPVSSPNLVVELGPMEIRTFLLKL 1472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00386 1472 MobiDBLite consensus disorder prediction 237 287 - -
Phco8g00386 1472 Pfam Glycosyl hydrolases family 38 N-terminal domain 502 816 IPR000602 GO:0004559|GO:0006013
Phco8g00386 1472 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Phco8g00386 1472 MobiDBLite consensus disorder prediction 262 281 - -
Phco8g00386 1472 FunFam 26S proteasome non-ATPase regulatory subunit 4 3 186 - -
Phco8g00386 1472 Pfam Glycosyl hydrolases family 38 C-terminal domain 1066 1280 IPR011682 GO:0004559|GO:0006013
Phco8g00386 1472 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Phco8g00386 1472 FunFam Alpha-mannosidase 783 863 - -
Phco8g00386 1472 FunFam Alpha-mannosidase 1350 1472 - -
Phco8g00386 1472 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 1364 1469 IPR041147 -
Phco8g00386 1472 FunFam Alpha-mannosidase 931 1042 - -
Phco8g00386 1472 MobiDBLite consensus disorder prediction 237 261 - -
Phco8g00386 1472 SUPERFAMILY Galactose mutarotase-like 929 1471 IPR011013 GO:0003824|GO:0005975|GO:0030246
Phco8g00386 1472 Gene3D Glycoside hydrolase family 38, central domain 864 919 IPR037094 GO:0004559|GO:0006013
Phco8g00386 1472 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 321 340 IPR003903 -
Phco8g00386 1472 SMART uim 219 238 IPR003903 -
Phco8g00386 1472 SMART uim 289 308 IPR003903 -
Phco8g00386 1472 SMART uim 321 340 IPR003903 -
Phco8g00386 1472 Gene3D - 944 1063 IPR013780 -
Phco8g00386 1472 FunFam Alpha-mannosidase 501 784 - -
Phco8g00386 1472 CDD VWA_26S_proteasome_subunit 1 188 - -
Phco8g00386 1472 SUPERFAMILY vWA-like 4 174 IPR036465 -
Phco8g00386 1472 Gene3D - 217 303 - -
Phco8g00386 1472 Pfam Alpha mannosidase middle domain 821 913 IPR015341 GO:0004559|GO:0006013
Phco8g00386 1472 Coils Coil 229 249 - -
Phco8g00386 1472 Pfam Ubiquitin interaction motif 322 337 IPR003903 -
Phco8g00386 1472 Pfam Ubiquitin interaction motif 289 304 IPR003903 -
Phco8g00386 1472 Pfam Ubiquitin interaction motif 221 234 IPR003903 -
Phco8g00386 1472 FunFam Alpha-mannosidase 864 919 - -
Phco8g00386 1472 Gene3D Glycoside hydrolase family 38, central domain 785 863 IPR037094 GO:0004559|GO:0006013
Phco8g00386 1472 SUPERFAMILY Families 57/38 glycoside transferase middle domain 821 920 IPR028995 -
Phco8g00386 1472 MobiDBLite consensus disorder prediction 382 402 - -
Phco8g00386 1472 FunFam 26S proteasome non-ATPase regulatory subunit 4 homolog 217 303 - -
Phco8g00386 1472 FunFam Alpha-mannosidase 1064 1330 - -
Phco8g00386 1472 SMART Alpha_mann_mid_2 821 895 IPR015341 GO:0004559|GO:0006013
Phco8g00386 1472 Gene3D Glycoside hydrolase 38, N terminal domain 501 784 IPR027291 -
Phco8g00386 1472 Gene3D - 1354 1472 - -
Phco8g00386 1472 Gene3D - 1064 1330 - -
Phco8g00386 1472 Pfam von Willebrand factor type A domain 6 115 IPR002035 -
Phco8g00386 1472 CDD GH38N_AMII_LAM_like 501 780 - -
Phco8g00386 1472 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 219 238 IPR003903 -
Phco8g00386 1472 CDD PSMD4_RAZUL 343 386 - -
Phco8g00386 1472 SUPERFAMILY Glycoside hydrolase/deacetylase 489 817 IPR011330 GO:0005975
Phco8g00386 1472 Coils Coil 1411 1431 - -
Phco8g00386 1472 SMART VWA_4 2 175 IPR002035 -
Phco8g00386 1472 PANTHER ALPHA-MANNOSIDASE 475 1472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00386 Phco-Chr8 3510911 3525251 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00386 8 3510911 3525251 Phco8g00386 8 3510911 3525251 ECH
Phco4g00850 4 6582723 6590070 Phco8g00386 8 3510911 3525251 PCT