Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00850 ATGAAAAGAACCATGGAAAAAAAAAAGGGAGACAAGCCCGCTTGGGTAGGCCCAACAAGTTCCGTCCCCCTCTGTATTACGCTGCACCAGATTACTGGTTTCAGAGAATTAGGCCGGTTTGGTTTCACAGCAAAGTTCTTTCACTCTTTAGCTTCTGAATCTTCAACAATGGTGCTCGAGGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGGGATTACGCTCCTTCTCGATTTCAAGCTCAAGCAGACGCTGTCAATCTCATTTGCGGGGCAAAGACCCAGTCTAATCCAGAAAATACAGTGGGAGTTCTCACAATGGCAGGGAAAGGGGTTCGAGTTTTGGTCACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATGGACTAGAAACAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACAACTGGCTCTTAAGCATCGGCAAAATAAAAAGCAACAGCAGAGAATTATTGTCTTTGCTGGAAGTCCTATCAAGCATGAAAAGAAGATGTTGGAGATGATAGGGAGAAAGTTGAAAAAGAATAGTGTTGCACTTGATATTGTTAATTTTGGTGAAGAAGACGAGGGGAAGTCAGAGAAGCTTGAAGCACTCCTTGCAGCTGTTAACAATAATGATACCAGCCACATCGTACATGTTCCATCTGGTCCAAGTGCTCTTTCTGATGTACTTATAAGTACACCTATTTTTACTGGTGATGGGGAAGGTGGAAGTGGTTTTGCTGCAGCTGCTGCTGCAGCAGCAGCTGGTGGTGTATCTGGATTTGAATTTGGTGTGGATCCAAACTTGGATCCAGAATTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAAGAGAGAGCCAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAGGATGCTTCCAAGCAAGAGAAGGGAGGTGAGCAGCAAGCCACCTCTCAAGATGCAACAATGAGTGAGCGTGCCAGTGCATCAACGTCTGAAGCTGAGAATAAGACAAGTGTTTTGATGGACGATGAGAATGCCCTTCTACAGCAGGCACTTGCAATGTCAATGGACGATCCTGCCATTAGCGATGATGTAAAAGATACAGATATGTCAGAAGCATCTGCAAGTGATCCCGAGTTGGCTCTAGCTCTCCAGTTGTCAATAGCAGATAGTACAAAGGATCAAGAAAGTCAGTCGGACATGAGCAAATTGTTGGCTGATCAATCCTTTGTTTCTTCTATCCTTGCATCTCTTCCTGGGGTTGACCCAAATGATCCTTCTGTCAAGGATTTACTGGCGTCCATGCAAAATCAGTCTGAGCCTCAACAGAAGAACGACGACAAACCTTCAGAGGAGGAGGAAAAGAAGTAA 1386 0.4582 MKRTMEKKKGDKPAWVGPTSSVPLCITLHQITGFRELGRFGFTAKFFHSLASESSTMVLEATMICIDNSEWMRNGDYAPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLETGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPIKHEKKMLEMIGRKLKKNSVALDIVNFGEEDEGKSEKLEALLAAVNNNDTSHIVHVPSGPSALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFEFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDASKQEKGGEQQATSQDATMSERASASTSEAENKTSVLMDDENALLQQALAMSMDDPAISDDVKDTDMSEASASDPELALALQLSIADSTKDQESQSDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQNQSEPQQKNDDKPSEEEEKK 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00850 461 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 278 297 IPR003903 -
Phco4g00850 461 Gene3D - 276 362 - -
Phco4g00850 461 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 57 452 IPR027040 GO:0006511|GO:0008540
Phco4g00850 461 MobiDBLite consensus disorder prediction 315 341 - -
Phco4g00850 461 FunFam 26S proteasome regulatory subunit N10 276 362 - -
Phco4g00850 461 Pfam von Willebrand factor type A domain 62 171 IPR002035 -
Phco4g00850 461 Gene3D von Willebrand factor, type A domain 59 242 IPR036465 -
Phco4g00850 461 SMART VWA_4 58 231 IPR002035 -
Phco4g00850 461 FunFam 26S proteasome non-ATPase regulatory subunit 4 59 242 - -
Phco4g00850 461 Coils Coil 288 308 - -
Phco4g00850 461 ProSiteProfiles VWFA domain profile. 61 245 IPR002035 -
Phco4g00850 461 SUPERFAMILY vWA-like 60 234 IPR036465 -
Phco4g00850 461 SMART uim 380 399 IPR003903 -
Phco4g00850 461 SMART uim 278 297 IPR003903 -
Phco4g00850 461 SMART uim 348 367 IPR003903 -
Phco4g00850 461 CDD PSMD4_RAZUL 401 445 - -
Phco4g00850 461 MobiDBLite consensus disorder prediction 298 344 - -
Phco4g00850 461 MobiDBLite consensus disorder prediction 421 461 - -
Phco4g00850 461 Pfam Ubiquitin interaction motif 348 363 IPR003903 -
Phco4g00850 461 Pfam Ubiquitin interaction motif 280 293 IPR003903 -
Phco4g00850 461 Pfam Ubiquitin interaction motif 382 396 IPR003903 -
Phco4g00850 461 CDD VWA_26S_proteasome_subunit 57 244 - -
Phco4g00850 461 MobiDBLite consensus disorder prediction 298 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00850 Phco-Chr4 6582723 6590070 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00850 4 6582723 6590070 Phco4g00850 4 6582723 6590070 ECH
Phco4g00850 4 6582723 6590070 Phco8g00386 8 3510911 3525251 PCT