Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00343 ATGGCTAACATGAAACTGTGTTCTTTGATGCTATGCTTGTTGCTGGCAATGTTGATGCTTGGGGCCAGAGCGCAACAATGTGGTAGACAAGCTGGTGGAGCATTGTGCGCAAATAGGTTATGTTGCAGCCAACATGGGTGGTGCGGAAACACCAATGAATACTGTGGAACAGGTTGCCAGAGCCAATGCCAACCTAGTGGCAGCGGCGGAGATGTCAGCAGCATCATCAGCCGTTCTATGTTCGAGGAAATGCTAAAGCACCGGAATGATCCAGCATGTCCCGGGCGTGGATTCTACACCTATGAAGCTTTTCTCACTGCTGCTAGATCTTTCAACGGCTTTGGCACAACAGGTGATGACACCACTCGCAAAAGGGAGCTTGCAGCTTTCTTCGGTCAAACATCTCATGAAACCACAGGAGGGTGGCCAAGTGCACCAGATGGTCCATACTCGTGGGGATATTGTTTTATCAACGAACGGAACCAGGATGTTTATTGCAGTGGTGGAGAATGGCCATGTGCTGCTGGTAAAAGATATTATGGACGAGGACCAATCCAACTCACACACAACTACAATTATGGGCTAGCTGGTAGAGAACTTGGTTTGGATTTGACGAATGATCCGGATCTAGTGGGAAGAGACAGAGTTGTGGCGTTCAGAACAGCCATATGGTTTTGGATGAGGGCACAAGGAAACAAGCCATCGTCCCATAATGTGATTATCGGAGCATGGACCCCATCTACTGCTGACACGCAAGCCAGGCGGATTCCCGGGTATGGTGTCATCACCAACATAATCAACGGGGGACTCGAATGCGGGCGCGGCCCGGATTCCAGGGTCCAAAGTCGGATCGGGTTCTACCAGAGGTACTGTCAATTGCTGGGTGTGAACCCAGGAAACAATTTGGACTGCAACAATCAAACCCCTTTTTAA 933 0.4973 MANMKLCSLMLCLLLAMLMLGARAQQCGRQAGGALCANRLCCSQHGWCGNTNEYCGTGCQSQCQPSGSGGDVSSIISRSMFEEMLKHRNDPACPGRGFYTYEAFLTAARSFNGFGTTGDDTTRKRELAAFFGQTSHETTGGWPSAPDGPYSWGYCFINERNQDVYCSGGEWPCAAGKRYYGRGPIQLTHNYNYGLAGRELGLDLTNDPDLVGRDRVVAFRTAIWFWMRAQGNKPSSHNVIIGAWTPSTADTQARRIPGYGVITNIINGGLECGRGPDSRVQSRIGFYQRYCQLLGVNPGNNLDCNNQTPF 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00343 310 Gene3D - 24 65 IPR036861 GO:0008061
Phco8g00343 310 ProSitePatterns Chitinases family 19 signature 2. 217 227 IPR000726 GO:0004568|GO:0006032|GO:0016998
Phco8g00343 310 CDD chitinase_GH19 76 304 - -
Phco8g00343 310 SMART ChitinBD_3 26 63 IPR001002 GO:0008061
Phco8g00343 310 PRINTS Chitin-binding domain signature 34 42 IPR001002 GO:0008061
Phco8g00343 310 PRINTS Chitin-binding domain signature 42 49 IPR001002 GO:0008061
Phco8g00343 310 PRINTS Chitin-binding domain signature 49 56 IPR001002 GO:0008061
Phco8g00343 310 Pfam Chitinase class I 75 304 IPR000726 GO:0004568|GO:0006032|GO:0016998
Phco8g00343 310 ProSitePatterns Chitin recognition or binding domain signature. 36 55 IPR018371 GO:0008061
Phco8g00343 310 PANTHER CHITINASE-RELATED 8 308 - -
Phco8g00343 310 Pfam Chitin recognition protein 26 63 IPR001002 GO:0008061
Phco8g00343 310 PIRSF Endochitinase 1 310 IPR016283 GO:0004568|GO:0005975
Phco8g00343 310 ProSitePatterns Chitinases family 19 signature 1. 93 115 IPR000726 GO:0004568|GO:0006032|GO:0016998
Phco8g00343 310 FunFam Basic endochitinase 24 65 - -
Phco8g00343 310 Gene3D - 80 310 - -
Phco8g00343 310 CDD ChtBD1_GH19_hevein 25 63 - -
Phco8g00343 310 SUPERFAMILY Lysozyme-like 71 310 IPR023346 -
Phco8g00343 310 FunFam Endochitinase (Chitinase) 157 213 - -
Phco8g00343 310 SUPERFAMILY Plant lectins/antimicrobial peptides 26 66 IPR036861 GO:0008061
Phco8g00343 310 ProSiteProfiles Chitin-binding type-1 domain profile. 24 65 IPR001002 GO:0008061
Phco8g00343 310 Gene3D Endochitinase, domain 2 158 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00343 Phco-Chr8 3182244 3183444 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00343 8 3182244 3183444 Phco8g00343 8 3182244 3183444 ECH
Phco4g00791 4 6107859 6108944 Phco8g00343 8 3182244 3183444 PCT