Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00339 ATGGCCAGAAGATCCCTACCGCTCCTCAAGGACCTCATCTCGCGCTCCTCGCCCAATCGGATCACCACCCGATCCGTCACCTACATGCACCGTCCGGGCGACGGAACGCCGCGGCCGGTGACGCTCATCCCGGGCGACGGGATTGGGCCGATGGTGACGGGCGCCGTTGAGCAGGTGATGGAGGCGATGCACGCGCCGGTTTACTTTGAGAAGTTCGAGGTCCACGGGAACATGAAGGTGATTCCGCAGGACGTGCTGGAGTCGATTCAGAAGAACAAGGTGTGTCTCAAGGGTGGCCTCGTCACCCCCATGGGCGGCGGCGTCAGTTCCCTCAACGTGCAGCTCCGGAAGGAACTCGATCTATACGCCTCCCTCGTCAACTGCTTCAACCTCCCCGGCTTGGCCACGCGCCACGATAACGTTGACATCGTCGTCATCAGGGAGAACACCGAAGGCGAGTACTCAGGACTCGAACACGAGGTCGTTCCCGGCGTGGTCGAAAGCCTTAAGGTAATTACGAAGTTCTGTTCAGAGCGTATTGCTAAATATGCATTCGAGTATGCTTACCTGAACAACAGAAAGACTGTCACTGCTGTGCACAAAGCAAATATTATGAAGCTTGCAGATGGTTTATTTTTGGAATCTTGTCGAGAGGTTGCCACAAAATACCCGGGAATCAAGTATAACGAAATTATTGTGGATAACTGCTGCATGCAGCTTGTTTCAAAGCCTGAGCAGTTTGATGTTATGGTGACCCCAAATCTATATGGAAATCTAATTGCAAATACTGCAGCAGGCATTGCTGGAGGTACTGGAGTTATGCCAGGAGGTAATGTTGGAGCCGAGCACGCTGTGTTTGAGCAAGGTGCTTCAGCAGGAAATGTTGGTAATGAACAAGTATTAGAGCAAAAGGTTGCCAATCCAGTGGCGCTTCTTCTCTCGTCAGCTATGATGCTTAGGCATCTTCAGTTTCCTGCCTTTGCTGACCGTTTGGAAACTGCTGTGGAACATGTGATTCTGGACGGCAAATACCGAACAAAGGATCTTGGAGGGACAAGCACCACCCAAGAGGTTGTGGATGCAGTTATAAATGCTTTAGATTGA 1104 0.5181 MARRSLPLLKDLISRSSPNRITTRSVTYMHRPGDGTPRPVTLIPGDGIGPMVTGAVEQVMEAMHAPVYFEKFEVHGNMKVIPQDVLESIQKNKVCLKGGLVTPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLATRHDNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKTVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLIANTAAGIAGGTGVMPGGNVGAEHAVFEQGASAGNVGNEQVLEQKVANPVALLLSSAMMLRHLQFPAFADRLETAVEHVILDGKYRTKDLGGTSTTQEVVDAVINALD 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00339 367 SMART Iso_dh_2 39 362 IPR024084 -
Phco8g00339 367 NCBIfam isocitrate dehydrogenase (NAD(+)) 36 366 IPR004434 GO:0006099
Phco8g00339 367 Gene3D Isopropylmalate Dehydrogenase 22 365 - -
Phco8g00339 367 FunFam Isocitrate dehydrogenase [NAD] regulatory subunit 1 27 366 - -
Phco8g00339 367 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 28 366 - -
Phco8g00339 367 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 37 366 - -
Phco8g00339 367 Pfam Isocitrate/isopropylmalate dehydrogenase 40 362 IPR024084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00339 Phco-Chr8 3142261 3145720 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00339 8 3142261 3145720 Phco8g00339 8 3142261 3145720 ECH
Phco4g00787 4 6074558 6079107 Phco8g00339 8 3142261 3145720 PCT