Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00787 ATGGCGACGTCACGATCCACGCCACTCCTCAAGCACCTCCTTGCCCGCCTGAATCCGGTCCGATCCGTCACATACATGCCTCGGCCCGGCGACGGCACCCCGCGAGCGGTGACGCTGATCCCGGGCGACGGAATCGGTCCCCTGGTGACCGGCGCGGTGGAGCAGGTTATGGAGGCGATGCACGCGCCGCTGTACTTCGAGAAGTATGAGGTGTACGGCGACATGAAGGCGGTGCCGGCGGAGGTGCTGGAATCGATAAGGAAGAACAAGGTGTGTTTGAAGGGAGGGCTGGCGACGCCTATGGGTGGTGGTGTGAGCTCGCTGAACGTGCAGCTGAGGAAGGAGCTTGATCTCTACGCCTCTCTCGTTAACTGCTTCAACCTCCCTGGCCTTCCTACGCGCCACGAGAACGTTGACATCGTCGTCATCAGGGAGAACACCGAAGGCGAGTACTCCGGCCTCGAACACGAGGTCGTTCCCGGCGTCGTCGAAAGCCTCAAGGTAATAACAAAGTTCTGTTCAGAGCGCATTGCTAAATATGCTTTCGAGTATGCTTACCTAAATAATAGAAAGAAGGTGACTGCTGTGCACAAAGCAAACATTATGAAACTTGCAGACGGTTTATTCTTGGAATCTTGTCGAGAGGTTGCCACAAGGTATCCTAGTATCAAGTACAGTGAAATTATTGTAGACAACTGCTGCATGCAGCTTGTTTCAAAGCCTGAGCAGTTTGATGTCATGGTAACCCCAAATCTTTATGGGAATCTTGTTGCAAATACAGCGGCAGGTATTGCTGGAGGCACCGGAGTCATGCCGGGAGGTAATGTCGGGGCTGATCACGCTGTGTTCGAACAAGGTGCTTCAGCAGGAAATGTTGGTAATGATAAAGTAGTAGAACAACAGAAGGCCAACCCGGTGGCACTCCTTCTTTCGTCGGCCATGATGCTTAGACATCTTCAGTTTCCTGCATTCGCTGACCGATTGGAAACTGCCGTTAAAAAAGTGATTTTGGAGGGTAAATATCGGACGAAGGACCTTGGCGGCACAAGCACCACACAAGAGGTTGTTGATGCAGTGATAGATGCTTTAGATTGA 1095 0.5251 MATSRSTPLLKHLLARLNPVRSVTYMPRPGDGTPRAVTLIPGDGIGPLVTGAVEQVMEAMHAPLYFEKYEVYGDMKAVPAEVLESIRKNKVCLKGGLATPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHENVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATRYPSIKYSEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNDKVVEQQKANPVALLLSSAMMLRHLQFPAFADRLETAVKKVILEGKYRTKDLGGTSTTQEVVDAVIDALD 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00787 364 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 34 363 - -
Phco4g00787 364 NCBIfam isocitrate dehydrogenase (NAD(+)) 33 362 IPR004434 GO:0006099
Phco4g00787 364 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 35 363 - -
Phco4g00787 364 Pfam Isocitrate/isopropylmalate dehydrogenase 37 359 IPR024084 -
Phco4g00787 364 SMART Iso_dh_2 36 359 IPR024084 -
Phco4g00787 364 FunFam Isocitrate dehydrogenase [NAD] regulatory subunit 1 24 363 - -
Phco4g00787 364 Gene3D Isopropylmalate Dehydrogenase 24 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00787 Phco-Chr4 6074558 6079107 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00787 4 6074558 6079107 Phco4g00787 4 6074558 6079107 ECH
Phco4g00787 4 6074558 6079107 Phco8g00339 8 3142261 3145720 PCT