Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00335 ATGATAGATGTTAGATCTTCATTAAGAGATCAAGCACTGGCGGAGTCTCTTCTCTGTTCTGGTTTACGCGCCAGTCTTCCATGTTCTAGGGTTAGGGCTCGCTTTCCTCTTCGCTTCTATTCAATCACTGCGAGATTGTCCGAGTCACGCGCCTTCCCGAACCACGTCATGGGAGGTGACAGTGCGGTTGAGGAATCCGAAGGGGTCAACGTCAACATCAATGTTCGCTGTTCTAACGGCTCTAAGTTTTCCGTTCAGACTTCCGTTGATTCCATCGTTAGTTCCTTCAAGGATCTCGTTGCTCGCAACTGCAACATGCCCGTCGAGCAACAACGCCTCATTTACAAGGGTCGCATTTTGAAGGATGATCAAACCCTCCGAAGCTACGGATTGGAGGCAGATCACACTGTCCATTTGGTTTGTGGTTCTGCACCTACTAATCCAACTGGCGGGACCAGTACTAGCAGCACCGATACCAATACCACAACAAATAATGCCAGAGGTGCTGGTGCGAATGAAGGTGGGAGTTTAGGAGGAGTTGGCTTTGGAGCTTCACTGTTCCCTGGACTAGGTATCAATGGGACTGGGGGAAATGCTTTATTTGGTGAGGGATTTCCTGATCTAGAACAGATGCAACAGCCATTTCTTTCAAATCCCAATTTAGTGAGAGAAATAATGAATTCGCCTGCCATGCAGAATCTAATAAATAATCCTGAGATAGTGCGGAATCTTATAATGAATAATCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGTTAGCACACATACTTAATGATCCCAGTACTCTCCGTCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGATAGAGCAATGAGCAATATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATATTCAAGAACCATTTTTGAATGCCACTACAATGGCTGGTAATACAGGAAATAATAATGCAGCAATTTCAGGGACTCATGGTGGCCATGCACGGGACCAATCAACTAATCCCTCAATTACTAGTTCTGAAGCAACTGCTGGTTCTCACTTACCTAATACTAACCCGCTTCCAAATCCTTGGTCCTCTTCTGGTACTGCAGGAGCTCAAAATAACACTAGTAGGTCATCAGCCACTGGTGTGGATGCCAGGCAGCAAGGACCTACTGGCTTAGGAGGGCTTGGTCTGCCAGACCTTGAAAACATGCTGGGTGGCAATGCCATGCCAGATGCTTCTTTATTGACCCAGTTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACTTTGAACCAGATTCTTGGTGCTAATACTGAGCAGCGTGGCATGCCTGATTCAAATTCTCTTAGAGAAGTAATGCAAAATCCGGAATTCCTTCGCTTGTTTTCTTCACCCGAGACATTGCAGCAACTCTTGTCATTTCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAGCAATCAACACGGGAATCTGGTCAAACTGGCCAAGGCACTGGACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAATAGATCAAATGAGCCACCAGAGCAATTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGGGATTCTTTGACACTCAAGAGAACATAAGAGCTCTTATTGCTACTTCGGGTAATGTTCATGCAGCAGTTGAACGACTATTGGGGAACTCTGGTCAGTAG 1794 0.4582 MIDVRSSLRDQALAESLLCSGLRASLPCSRVRARFPLRFYSITARLSESRAFPNHVMGGDSAVEESEGVNVNINVRCSNGSKFSVQTSVDSIVSSFKDLVARNCNMPVEQQRLIYKGRILKDDQTLRSYGLEADHTVHLVCGSAPTNPTGGTSTSSTDTNTTTNNARGAGANEGGSLGGVGFGASLFPGLGINGTGGNALFGEGFPDLEQMQQPFLSNPNLVREIMNSPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATTMAGNTGNNNAAISGTHGGHARDQSTNPSITSSEATAGSHLPNTNPLPNPWSSSGTAGAQNNTSRSSATGVDARQQGPTGLGGLGLPDLENMLGGNAMPDASLLTQLMQNPAISQMMQSMLSNPQTLNQILGANTEQRGMPDSNSLREVMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQSTRESGQTGQGTGPMNNLGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYASQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00335 597 Gene3D - 537 597 - -
Phco8g00335 597 SUPERFAMILY UBA-like 551 593 IPR009060 GO:0005515
Phco8g00335 597 CDD Ubl_Dsk2p_like 71 143 - -
Phco8g00335 597 Gene3D - 243 301 - -
Phco8g00335 597 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 549 594 IPR015940 -
Phco8g00335 597 Gene3D - 68 155 - -
Phco8g00335 597 SMART uba_6 555 593 IPR015940 -
Phco8g00335 597 FunFam Ubiquitin domain-containing protein DSK2b 538 596 - -
Phco8g00335 597 MobiDBLite consensus disorder prediction 323 410 - -
Phco8g00335 597 Pfam Ubiquitin family 73 141 IPR000626 GO:0005515
Phco8g00335 597 MobiDBLite consensus disorder prediction 323 397 - -
Phco8g00335 597 MobiDBLite consensus disorder prediction 143 166 - -
Phco8g00335 597 PANTHER UBIQUILIN 67 592 IPR015496 -
Phco8g00335 597 FunFam Ubiquitin domain-containing protein DSK2b 245 301 - -
Phco8g00335 597 SMART ubq_7 71 142 IPR000626 GO:0005515
Phco8g00335 597 ProSiteProfiles Ubiquitin domain profile. 71 140 IPR000626 GO:0005515
Phco8g00335 597 SMART CBM 412 453 IPR006636 -
Phco8g00335 597 SMART CBM 457 491 IPR006636 -
Phco8g00335 597 SMART CBM 248 287 IPR006636 -
Phco8g00335 597 SMART CBM 194 235 IPR006636 -
Phco8g00335 597 Pfam UBA/TS-N domain 555 591 IPR015940 -
Phco8g00335 597 SUPERFAMILY Ubiquitin-like 70 159 IPR029071 -
Phco8g00335 597 CDD UBA_PLICs 555 593 - -
Phco8g00335 597 FunFam Ubiquitin domain-containing protein DSK2b 68 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00335 Phco-Chr8 3114025 3122974 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00335 8 3114025 3122974 Phco8g00335 8 3114025 3122974 ECH
Phco4g00779 4 5989615 5995103 Phco8g00335 8 3114025 3122974 PCT